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https://gitlab.ub.uni-bielefeld.de/sfb1288inf/ocr.git
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Update
This commit is contained in:
Patrick Jentsch
parent
9f3c71a118
commit
0d3efe167e
@ -4,6 +4,7 @@
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import xml.etree.ElementTree as ET
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from xml.sax.saxutils import escape
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import os
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import re
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import sys
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input_files = filter(lambda x: x.endswith(".hocr"), sorted(os.listdir(sys.argv[1])))
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@ -25,7 +26,8 @@ output_file.write('<?xml version="1.0" encoding="UTF-8"?>\n' +
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for input_file in input_files:
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tree = ET.parse(os.path.join(sys.argv[1], input_file))
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output_file.write(' <pb n="%s"/>\n' % (input_file.split(".")[0]))
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page_number = int(re.search(r'\d+', input_file.split(".")[0]).group(0))
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output_file.write(' <pb n="%i"/>\n' % (page_number))
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for para in tree.findall(".//*[@class='ocr_par']"):
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output_file.write(' <p>\n')
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for line in para.findall(".//*[@class='ocr_line']"):
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143
ocr
143
ocr
@ -2,7 +2,6 @@
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# coding=utf-8
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"""
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ocr
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@ -26,9 +25,13 @@ from pyflow import WorkflowRunner
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' Implement --start-page: First page to ocr
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'''
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def parse_arguments():
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parser = argparse.ArgumentParser("Performs OCR of (historical) documents utilizing OCRopus for preprocessing and Tesseract OCR \
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for OCR. Available outputs are HOCR, PDF, shrinked PDF, and simple DTAbf \
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(TEI P5 compliant). Software requirements: imagemagick, ocropus, pdftk, pdftoppm, poppler-utils, pyflow, python2.7, tesseract")
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parser = argparse.ArgumentParser(
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"Performs OCR of (historical) documents utilizing OCRopus for \
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preprocessing and Tesseract OCR for OCR. Available outputs are HOCR, \
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PDF, shrinked PDF, and simple DTAbf (TEI P5 compliant). Software \
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requirements: imagemagick, ocropus, pdftk, pdftoppm, poppler-utils, \
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pyflow, python2.7, tesseract"
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)
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parser.add_argument("-i",
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dest="inputDir",
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@ -81,12 +84,7 @@ class OCRWorkflow(WorkflowRunner):
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mkdir_job_number = 0
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for job in self.jobs:
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mkdir_job_number += 1
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cmd = 'mkdir -p "%s" "%s" "%s" "%s"' % (
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os.path.join(job["output_dir"], "hocr_files"),
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os.path.join(job["output_dir"], "tmp", "ocropus-nlbin"),
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os.path.join(job["output_dir"], "tmp", "tesseract"),
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os.path.join(job["output_dir"], "tmp", "tiff_files")
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)
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cmd = 'mkdir -p "%s"' % (os.path.join(job["output_dir"], "tmp"))
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mkdir_jobs.append(self.addTask(label="mkdir_job_-_%i" % (mkdir_job_number), command=cmd))
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###
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@ -102,20 +100,20 @@ class OCRWorkflow(WorkflowRunner):
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'''
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cmd = 'convert "%s" "%s"' % (
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job["path"],
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os.path.join(job["output_dir"], "tmp", "tiff_files", os.path.basename(job["path"]).rsplit(".", 1)[0] + "-%sd.tif" % ("%")))
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os.path.join(job["output_dir"], "tmp", job["basename"].rsplit(".", 1)[0] + "-%sd.tif" % ("%")))
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'''
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# WORKAROUND
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cmd = 'tiff2pdf -o "%s" "%s" && pdftoppm "%s" "%s" -tiff -r 300 -tiffcompression lzw -cropbox && rm "%s"' % (
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os.path.join(job["output_dir"], "tmp", "tiff_files", job["basename"].rsplit(".", 1)[0] + ".pdf"),
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os.path.join(job["output_dir"], "tmp", job["basename"].rsplit(".", 1)[0] + ".pdf"),
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job["path"],
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os.path.join(job["output_dir"], "tmp", "tiff_files", job["basename"].rsplit(".", 1)[0] + ".pdf"),
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os.path.join(job["output_dir"], "tmp", "tiff_files", job["basename"].rsplit(".", 1)[0]),
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os.path.join(job["output_dir"], "tmp", "tiff_files", job["basename"].rsplit(".", 1)[0] + ".pdf")
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os.path.join(job["output_dir"], "tmp", job["basename"].rsplit(".", 1)[0] + ".pdf"),
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os.path.join(job["output_dir"], "tmp", "page"),
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os.path.join(job["output_dir"], "tmp", job["basename"].rsplit(".", 1)[0] + ".pdf")
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)
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else:
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cmd = 'pdftoppm "%s" "%s" -tiff -r 300 -tiffcompression lzw -cropbox' % (
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job["path"],
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os.path.join(job["output_dir"], "tmp", "tiff_files", "page")
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os.path.join(job["output_dir"], "tmp", "page")
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)
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split_jobs.append(self.addTask(label="split_job_-_%i" % (split_job_number), command=cmd, dependencies=mkdir_jobs))
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@ -123,95 +121,108 @@ class OCRWorkflow(WorkflowRunner):
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# Task "ocropus_nlbin_job": binarize tiff files from previous split
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# Dependencies: split_jobs
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###
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ocropusnlbin_jobs = []
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if (not self.skipBinarization):
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self.waitForTasks()
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ocropusnlbin_job_number = 0
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binarization_jobs = []
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binarization_job_number = 0
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'''
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' We run ocropus-nlbin with either four or, if there are less then four
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' cores available for this workflow, the available core number.
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'''
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binarization_job_nCores = min(4, self.nCores)
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if not self.skipBinarization:
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for job in self.jobs:
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ocropusnlbin_job_number += 1
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cmd = 'ocropus-nlbin -Q "%i" -o "%s" "%s"/*' % (
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max(1, int(self.nCores / len(self.jobs))),
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os.path.join(job["output_dir"], "tmp", "ocropus-nlbin"),
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os.path.join(job["output_dir"], "tmp", "tiff_files")
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binarization_job_number += 1
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cmd = 'ocropus-nlbin -Q "%i" -o "%s" "%s"/*.tif' % (
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binarization_job_nCores,
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os.path.join(job["output_dir"], "tmp"),
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os.path.join(job["output_dir"], "tmp")
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)
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ocropusnlbin_jobs.append(self.addTask(label="ocropusnlbin_job_-_%i" % (ocropusnlbin_job_number), command=cmd, dependencies=split_jobs, nCores=max(1, int(self.nCores / len(self.jobs)))))
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binarization_jobs.append(self.addTask(label="binarization_job_-_%i" % (binarization_job_number), command=cmd, dependencies=split_jobs, nCores=binarization_job_nCores))
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###
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# Task "tesseract_job": perform OCR on binarized images
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# Dependencies: ocropusnlbin_jobs
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# Task "post_binarization_job": Normalize file names from binarization
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# Dependencies: binarization_jobs
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###
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self.waitForTasks()
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tesseract_jobs = []
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tesseract_job_number = 0
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post_binarization_jobs = []
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post_binarization_job_number = 0
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if not self.skipBinarization:
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for job in self.jobs:
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# This list is empty if you don't wait for ocropus_nlbin_jobs to complete
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for file in filter(lambda x: self.skipBinarization or x.endswith(".bin.png"), os.listdir(os.path.join(job["output_dir"], "tmp", "tiff_files" if self.skipBinarization else "ocropus-nlbin"))):
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tesseract_job_number += 1
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for file in filter(lambda x: x.endswith(".bin.png") or x.endswith(".nrm.png"), os.listdir(os.path.join(job["output_dir"], "tmp"))):
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post_binarization_job_number += 1
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cmd = 'mv "%s" "%s"' % (
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os.path.join(job["output_dir"], "tmp", file),
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os.path.join(job["output_dir"], "tmp", "page-%i.%s" % (int(file.split(".", 1)[0]), file.split(".", 1)[1])),
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)
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post_binarization_jobs.append(self.addTask(label="post_binarization_job_-_%i" % (post_binarization_job_number), command=cmd, dependencies=binarization_jobs))
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###
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# Task "ocr_job": perform OCR
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# Dependencies: waitForTasks
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###
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self.waitForTasks()
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ocr_jobs = []
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ocr_job_number = 0
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'''
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' Tesseract runs fastest with four cores. So we run it with either four
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' or, if there are less then four cores available for this workflow, the
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' available core number.
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'''
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ocr_job_nCores = min(4, self.nCores)
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for job in self.jobs:
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for file in filter(lambda x: x.endswith(".tif") if self.skipBinarization else x.endswith(".bin.png"), os.listdir(os.path.join(job["output_dir"], "tmp"))):
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ocr_job_number += 1
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cmd = 'tesseract "%s" "%s" -l "%s" hocr pdf txt' % (
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os.path.join(job["output_dir"], "tmp", "tiff_files" if self.skipBinarization else "ocropus-nlbin", file),
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os.path.join(job["output_dir"], "tmp", "tesseract", file.rsplit(".", 1 if self.skipBinarization else 2)[0]),
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os.path.join(job["output_dir"], "tmp", file),
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os.path.join(job["output_dir"], "tmp", file.rsplit(".", 1 if self.skipBinarization else 2)[0]),
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self.lang
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)
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tesseract_jobs.append(self.addTask(label="tesseract_job_-_%i" % (tesseract_job_number), command=cmd, dependencies=ocropusnlbin_jobs, nCores=min(4, self.nCores)))
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ocr_jobs.append(self.addTask(label="ocr_job_-_%i" % (ocr_job_number), command=cmd, dependencies=post_binarization_jobs, nCores=ocr_job_nCores))
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###
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# Task "hocr_to_teip_job": create TEI P5 file from hocr files
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# Dependencies: tesseract_jobs
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# Dependencies: ocr_jobs
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###
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hocr_to_tei_jobs = []
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hocr_to_tei_job_number = 0
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for job in self.jobs:
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hocr_to_tei_job_number += 1
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cmd = 'hocrtotei "%s" "%s"' % (
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os.path.join(job["output_dir"], "tmp", "tesseract"),
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os.path.join(job["output_dir"], "tmp"),
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os.path.join(job["output_dir"], job["basename"].rsplit(".", 1)[0] + ".xml")
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)
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hocr_to_tei_jobs.append(self.addTask(label="hocr_to_tei_job_-_%i" % (hocr_to_tei_job_number), command=cmd, dependencies=tesseract_jobs))
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###
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# Task "move_hocr_job": move hocr files from <output_dir>/tmp/tesseract to <output_dir>/hocr_files
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# Dependencies: hocr_to_teip5_jobs
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###
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move_hocr_jobs = []
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move_hocr_job_number = 0
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for job in self.jobs:
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move_hocr_job_number += 1
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cmd = 'mv "%s"/*.hocr "%s"' % (
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os.path.join(job["output_dir"], "tmp", "tesseract"),
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os.path.join(job["output_dir"], "hocr_files")
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)
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move_hocr_jobs.append(self.addTask(label="move_hocr_job_-_%i" % (move_hocr_job_number), command=cmd, dependencies=hocr_to_tei_jobs))
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hocr_to_tei_jobs.append(self.addTask(label="hocr_to_tei_job_-_%i" % (hocr_to_tei_job_number), command=cmd, dependencies=ocr_jobs))
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###
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# Task "pdf_merge_job": Merge PDF files
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# Dependencies: tesseract_jobs
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# Dependencies: ocr_jobs
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###
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pdf_merge_jobs = []
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pdf_merge_job_number = 0
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for job in self.jobs:
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pdf_merge_job_number += 1
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cmd = 'pdftk "%s"/*.pdf cat output "%s"' % (
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os.path.join(job["output_dir"], "tmp", "tesseract"),
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os.path.join(job["output_dir"], "tmp"),
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os.path.join(job["output_dir"], job["basename"].rsplit(".", 1)[0] + ".pdf")
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)
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pdf_merge_jobs.append(self.addTask(label="pdf_merge_job_-_%i" % (pdf_merge_job_number), command=cmd, dependencies=tesseract_jobs))
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pdf_merge_jobs.append(self.addTask(label="pdf_merge_job_-_%i" % (pdf_merge_job_number), command=cmd, dependencies=ocr_jobs))
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###
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# Task "pdf_to_txt_job":
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# Dependencies: pdf_merge_jobs
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# Task "txt_merge_job": Merge .txt files
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# Dependencies: ocr_jobs
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###
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pdf_to_txt_jobs = []
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pdf_to_txt_job_number = 0
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txt_merge_jobs = []
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txt_merge_job_number = 0
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for job in self.jobs:
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pdf_to_txt_job_number += 1
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cmd = 'pdftotext -raw "%s"' % (
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os.path.join(job["output_dir"], job["basename"].rsplit(".", 1)[0] + ".pdf")
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txt_merge_job_number += 1
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cmd = 'cat "%s"/*.txt > "%s"' % (
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os.path.join(job["output_dir"], "tmp"),
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os.path.join(job["output_dir"], job["basename"].rsplit(".", 1)[0] + ".txt")
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)
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pdf_merge_jobs.append(self.addTask(label="pdf_to_txt_job_-_%i" % (pdf_to_txt_job_number), command=cmd, dependencies=pdf_merge_jobs))
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txt_merge_jobs.append(self.addTask(label="txt_merge_job_-_%i" % (txt_merge_job_number), command=cmd, dependencies=ocr_jobs))
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###
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# Task "cleanup_job": remove temporary files
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# Dependencies: hocr_to_teip5_jobs + move_hocr_jobs + pdf_merge_jobs + pdf_to_txt_jobs
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# Dependencies: hocr_to_teip5_jobs + pdf_merge_jobs + txt_merge_jobs
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###
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cleanup_jobs = []
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cleanup_job_counter = 0
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@ -221,7 +232,7 @@ class OCRWorkflow(WorkflowRunner):
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cmd = 'rm -r "%s"' % (
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os.path.join(job["output_dir"], "tmp")
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)
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cleanup_jobs.append(self.addTask(label="cleanup_job_-_%i" % (cleanup_job_counter), command=cmd, dependencies=hocr_to_tei_jobs + move_hocr_jobs + pdf_merge_jobs + pdf_to_txt_jobs))
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cleanup_jobs.append(self.addTask(label="cleanup_job_-_%i" % (cleanup_job_counter), command=cmd, dependencies=hocr_to_tei_jobs + pdf_merge_jobs + txt_merge_jobs))
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def analyze_jobs(inputDir, outputDir, level=1):
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