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add tables for files
This commit is contained in:
Patrick Jentsch
parent
8158c742d9
commit
abe2ed1666
@ -250,6 +250,28 @@ class AnonymousUser(AnonymousUserMixin):
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return False
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class JobInput(db.Model):
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"""
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Class to define Files.
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"""
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__tablename__ = 'job_inputs'
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# Primary key
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id = db.Column(db.Integer, primary_key=True)
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filename = db.Column(db.String(255))
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job_id = db.Column(db.Integer, db.ForeignKey('jobs.id'))
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class JobResult(db.Model):
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"""
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Class to define Files.
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"""
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__tablename__ = 'job_results'
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# Primary key
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id = db.Column(db.Integer, primary_key=True)
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filename = db.Column(db.String(255))
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job_id = db.Column(db.Integer, db.ForeignKey('jobs.id'))
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class Job(db.Model):
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"""
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Class to define Jobs.
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@ -272,6 +294,15 @@ class Job(db.Model):
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status = db.Column(db.String(16))
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title = db.Column(db.String(32))
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user_id = db.Column(db.Integer, db.ForeignKey('users.id'))
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# Relationships
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inputs = db.relationship('JobInput',
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backref='job',
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lazy='dynamic',
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cascade='save-update, merge, delete')
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results = db.relationship('JobResult',
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backref='job',
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lazy='dynamic',
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cascade='save-update, merge, delete')
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def __init__(self, **kwargs):
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super(Job, self).__init__(**kwargs)
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@ -329,6 +360,17 @@ class Job(db.Model):
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db.session.commit()
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class CorpusFile(db.Model):
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"""
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Class to define Files.
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"""
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__tablename__ = 'corpus_files'
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# Primary key
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id = db.Column(db.Integer, primary_key=True)
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filename = db.Column(db.String(255))
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corpus_id = db.Column(db.Integer, db.ForeignKey('corpora.id'))
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class Corpus(db.Model):
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"""
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Class to define a corpus.
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@ -340,6 +382,11 @@ class Corpus(db.Model):
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description = db.Column(db.String(255))
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title = db.Column(db.String(32))
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user_id = db.Column(db.Integer, db.ForeignKey('users.id'))
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# Relationships
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files = db.relationship('CorpusFile',
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backref='relation',
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lazy='dynamic',
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cascade='save-update, merge, delete')
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def __init__(self, **kwargs):
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super(Corpus, self).__init__(**kwargs)
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@ -1,9 +1,10 @@
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from flask import abort, current_app, flash, redirect, render_template, url_for
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from . import services
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from flask_login import current_user, login_required
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from werkzeug.utils import secure_filename
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from . import services
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from .forms import NewNLPJobForm, NewOCRJobForm
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from ..models import Job
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from .. import db
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from ..models import Job, JobInput
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import json
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import os
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@ -53,7 +54,10 @@ def service(service_handle):
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else:
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for file in new_job_form.files.data:
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''' TODO: Use secure filename '''
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file.save(os.path.join(dir, file.filename))
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filename = secure_filename(file.filename)
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file.save(os.path.join(dir, filename))
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job_input = JobInput(filename=filename, job=job)
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db.session.add(job_input)
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job.status = 'submitted'
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db.session.commit()
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flash('Job created!')
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@ -1 +0,0 @@
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Generic single-database configuration.
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@ -1,45 +0,0 @@
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# A generic, single database configuration.
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[alembic]
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# template used to generate migration files
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# file_template = %%(rev)s_%%(slug)s
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# set to 'true' to run the environment during
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# the 'revision' command, regardless of autogenerate
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# revision_environment = false
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# Logging configuration
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[loggers]
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keys = root,sqlalchemy,alembic
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[handlers]
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keys = console
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[formatters]
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keys = generic
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[logger_root]
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level = WARN
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handlers = console
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qualname =
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[logger_sqlalchemy]
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level = WARN
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handlers =
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qualname = sqlalchemy.engine
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[logger_alembic]
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level = INFO
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handlers =
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qualname = alembic
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[handler_console]
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class = StreamHandler
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args = (sys.stderr,)
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level = NOTSET
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formatter = generic
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[formatter_generic]
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format = %(levelname)-5.5s [%(name)s] %(message)s
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datefmt = %H:%M:%S
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@ -1,96 +0,0 @@
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from __future__ import with_statement
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import logging
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from logging.config import fileConfig
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from sqlalchemy import engine_from_config
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from sqlalchemy import pool
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from alembic import context
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# this is the Alembic Config object, which provides
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# access to the values within the .ini file in use.
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config = context.config
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# Interpret the config file for Python logging.
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# This line sets up loggers basically.
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fileConfig(config.config_file_name)
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logger = logging.getLogger('alembic.env')
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# add your model's MetaData object here
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# for 'autogenerate' support
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# from myapp import mymodel
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# target_metadata = mymodel.Base.metadata
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from flask import current_app
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config.set_main_option(
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'sqlalchemy.url', current_app.config.get(
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'SQLALCHEMY_DATABASE_URI').replace('%', '%%'))
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target_metadata = current_app.extensions['migrate'].db.metadata
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# other values from the config, defined by the needs of env.py,
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# can be acquired:
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# my_important_option = config.get_main_option("my_important_option")
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# ... etc.
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def run_migrations_offline():
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"""Run migrations in 'offline' mode.
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This configures the context with just a URL
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and not an Engine, though an Engine is acceptable
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here as well. By skipping the Engine creation
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we don't even need a DBAPI to be available.
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Calls to context.execute() here emit the given string to the
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script output.
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"""
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url = config.get_main_option("sqlalchemy.url")
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context.configure(
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url=url, target_metadata=target_metadata, literal_binds=True
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)
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with context.begin_transaction():
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context.run_migrations()
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def run_migrations_online():
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"""Run migrations in 'online' mode.
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In this scenario we need to create an Engine
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and associate a connection with the context.
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"""
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# this callback is used to prevent an auto-migration from being generated
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# when there are no changes to the schema
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# reference: http://alembic.zzzcomputing.com/en/latest/cookbook.html
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def process_revision_directives(context, revision, directives):
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if getattr(config.cmd_opts, 'autogenerate', False):
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script = directives[0]
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if script.upgrade_ops.is_empty():
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directives[:] = []
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logger.info('No changes in schema detected.')
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connectable = engine_from_config(
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config.get_section(config.config_ini_section),
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prefix='sqlalchemy.',
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poolclass=pool.NullPool,
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)
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with connectable.connect() as connection:
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context.configure(
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connection=connection,
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target_metadata=target_metadata,
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process_revision_directives=process_revision_directives,
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**current_app.extensions['migrate'].configure_args
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)
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with context.begin_transaction():
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context.run_migrations()
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if context.is_offline_mode():
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run_migrations_offline()
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else:
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run_migrations_online()
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@ -1,24 +0,0 @@
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"""${message}
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Revision ID: ${up_revision}
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Revises: ${down_revision | comma,n}
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Create Date: ${create_date}
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"""
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from alembic import op
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import sqlalchemy as sa
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${imports if imports else ""}
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# revision identifiers, used by Alembic.
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revision = ${repr(up_revision)}
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down_revision = ${repr(down_revision)}
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branch_labels = ${repr(branch_labels)}
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depends_on = ${repr(depends_on)}
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def upgrade():
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${upgrades if upgrades else "pass"}
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def downgrade():
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${downgrades if downgrades else "pass"}
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@ -1,80 +0,0 @@
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"""initial migration
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Revision ID: 685dff1cc01b
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Revises:
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Create Date: 2019-09-13 07:31:57.149510
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"""
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from alembic import op
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import sqlalchemy as sa
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# revision identifiers, used by Alembic.
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revision = '685dff1cc01b'
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down_revision = None
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branch_labels = None
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depends_on = None
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def upgrade():
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# ### commands auto generated by Alembic - please adjust! ###
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op.create_table('roles',
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sa.Column('id', sa.Integer(), nullable=False),
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sa.Column('default', sa.Boolean(), nullable=True),
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sa.Column('name', sa.String(length=64), nullable=True),
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sa.Column('permissions', sa.Integer(), nullable=True),
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sa.PrimaryKeyConstraint('id'),
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sa.UniqueConstraint('name')
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)
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op.create_index(op.f('ix_roles_default'), 'roles', ['default'], unique=False)
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op.create_table('users',
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sa.Column('id', sa.Integer(), nullable=False),
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sa.Column('confirmed', sa.Boolean(), nullable=True),
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sa.Column('email', sa.String(length=254), nullable=True),
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sa.Column('password_hash', sa.String(length=128), nullable=True),
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sa.Column('registration_date', sa.DateTime(), nullable=True),
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sa.Column('role_id', sa.Integer(), nullable=True),
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sa.Column('username', sa.String(length=64), nullable=True),
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sa.ForeignKeyConstraint(['role_id'], ['roles.id'], ),
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sa.PrimaryKeyConstraint('id')
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)
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op.create_index(op.f('ix_users_email'), 'users', ['email'], unique=True)
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op.create_index(op.f('ix_users_username'), 'users', ['username'], unique=True)
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op.create_table('corpora',
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sa.Column('id', sa.Integer(), nullable=False),
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sa.Column('creation_date', sa.DateTime(), nullable=True),
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sa.Column('description', sa.String(length=255), nullable=True),
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sa.Column('title', sa.String(length=32), nullable=True),
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sa.Column('user_id', sa.Integer(), nullable=True),
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sa.ForeignKeyConstraint(['user_id'], ['users.id'], ),
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sa.PrimaryKeyConstraint('id')
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)
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op.create_table('jobs',
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sa.Column('id', sa.Integer(), nullable=False),
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sa.Column('creation_date', sa.DateTime(), nullable=True),
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sa.Column('description', sa.String(length=255), nullable=True),
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sa.Column('end_date', sa.DateTime(), nullable=True),
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sa.Column('mem_mb', sa.Integer(), nullable=True),
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sa.Column('n_cores', sa.Integer(), nullable=True),
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sa.Column('service', sa.String(length=64), nullable=True),
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sa.Column('service_args', sa.String(length=255), nullable=True),
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sa.Column('service_version', sa.String(length=16), nullable=True),
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sa.Column('status', sa.String(length=16), nullable=True),
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sa.Column('title', sa.String(length=32), nullable=True),
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sa.Column('user_id', sa.Integer(), nullable=True),
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sa.ForeignKeyConstraint(['user_id'], ['users.id'], ),
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sa.PrimaryKeyConstraint('id')
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)
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# ### end Alembic commands ###
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def downgrade():
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# ### commands auto generated by Alembic - please adjust! ###
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op.drop_table('jobs')
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op.drop_table('corpora')
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op.drop_index(op.f('ix_users_username'), table_name='users')
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op.drop_index(op.f('ix_users_email'), table_name='users')
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op.drop_table('users')
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op.drop_index(op.f('ix_roles_default'), table_name='roles')
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op.drop_table('roles')
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# ### end Alembic commands ###
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@ -1,28 +0,0 @@
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"""empty message
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Revision ID: f16b80c57038
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Revises: 685dff1cc01b
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Create Date: 2019-10-09 09:34:37.616747
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"""
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from alembic import op
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import sqlalchemy as sa
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# revision identifiers, used by Alembic.
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revision = 'f16b80c57038'
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down_revision = '685dff1cc01b'
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branch_labels = None
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depends_on = None
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def upgrade():
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# ### commands auto generated by Alembic - please adjust! ###
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op.add_column('users', sa.Column('is_dark', sa.Boolean(), nullable=True))
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# ### end Alembic commands ###
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def downgrade():
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# ### commands auto generated by Alembic - please adjust! ###
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op.drop_column('users', 'is_dark')
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# ### end Alembic commands ###
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