mirror of
https://gitlab.ub.uni-bielefeld.de/sfb1288inf/nopaque.git
synced 2024-11-14 16:55:42 +00:00
Rework a lot of daemon code. Add missing patch messages
This commit is contained in:
Patrick Jentsch
parent
da350474fb
commit
575dc45242
@ -1,3 +1,4 @@
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from flask import current_app
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from ..models import Corpus
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import docker
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import logging
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@ -26,39 +27,69 @@ class CheckCorporaMixin:
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self.remove_cqpserver_container(corpus)
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def create_build_corpus_service(self, corpus):
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corpus_data_dir = os.path.join(corpus.path, 'data')
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shutil.rmtree(corpus_data_dir, ignore_errors=True)
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os.mkdir(corpus_data_dir)
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corpus_registry_dir = os.path.join(corpus.path, 'registry')
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shutil.rmtree(corpus_registry_dir, ignore_errors=True)
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os.mkdir(corpus_registry_dir)
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corpus_file = os.path.join(corpus.path, 'merged', 'corpus.vrt')
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service_kwargs = {
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'command': 'docker-entrypoint.sh build-corpus',
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'constraints': ['node.role==worker'],
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'labels': {'origin': 'nopaque',
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'type': 'corpus.build',
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'corpus_id': str(corpus.id)},
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'mounts': [corpus_file + ':/root/files/corpus.vrt:ro',
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corpus_data_dir + ':/corpora/data:rw',
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corpus_registry_dir + ':/usr/local/share/cwb/registry:rw'],
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'name': 'build-corpus_{}'.format(corpus.id),
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'restart_policy': docker.types.RestartPolicy()
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''' # Docker service settings # '''
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''' ## Command ## '''
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command = 'docker-entrypoint.sh build-corpus'
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''' ## Constraints ## '''
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constraints = ['node.role==worker']
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''' ## Image ## '''
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image = current_app.config['DOCKER_IMAGE_PREFIX'] + 'cqpserver:latest'
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''' ## Labels ## '''
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labels = {
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'origin': current_app.config['SERVER_NAME'],
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'type': 'build-corpus',
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'corpus_id': str(corpus.id)
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}
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service_image = \
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'gitlab.ub.uni-bielefeld.de:4567/sfb1288inf/cqpserver:latest'
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''' ## Mounts ## '''
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''' ### Corpus file mount ### '''
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corpus_file_source = os.path.join(corpus.path, 'merged', 'corpus.vrt')
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corpus_file_target = '/root/files/corpus.vrt'
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corpus_file_mount = \
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corpus_file_source + ':' + corpus_file_target + ':ro'
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''' ### Corpus data mount ### '''
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corpus_data_source = os.path.join(corpus.path, 'data')
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corpus_data_target = '/corpora/data'
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corpus_data_mount = \
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corpus_data_source + ':' + corpus_data_target + ':rw'
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# Make sure that their is no data in the corpus data directory
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shutil.rmtree(corpus_data_source, ignore_errors=True)
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os.mkdir(corpus_data_source)
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''' ### Corpus registry mount ### '''
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corpus_registry_source = os.path.join(corpus.path, 'registry')
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corpus_registry_target = '/usr/local/share/cwb/registry'
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corpus_registry_mount = \
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corpus_registry_source + ':' + corpus_registry_target + ':rw'
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# Make sure that their is no data in the corpus registry directory
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shutil.rmtree(corpus_registry_source, ignore_errors=True)
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os.mkdir(corpus_registry_source)
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mounts = [corpus_file_mount, corpus_data_mount, corpus_registry_mount]
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''' ## Name ## '''
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name = 'build-corpus_{}'.format(corpus.id)
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''' ## Restart policy ## '''
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restart_policy = docker.types.RestartPolicy()
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try:
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self.docker.services.create(service_image, **service_kwargs)
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self.docker.services.create(
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image,
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command=command,
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constraints=constraints,
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labels=labels,
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mounts=mounts,
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name=name,
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restart_policy=restart_policy
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)
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except docker.errors.APIError as e:
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logging.error(
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'Create "{}" service raised '.format(service_kwargs['name'])
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'Create "{}" service raised '.format(name)
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+ '"docker.errors.APIError" The server returned an error. '
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+ 'Details: {}'.format(e)
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)
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else:
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corpus.status = 'queued'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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def checkout_build_corpus_service(self, corpus):
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@ -73,7 +104,10 @@ class CheckCorporaMixin:
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)
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corpus.status = 'failed'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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except docker.errors.APIError as e:
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logging.error(
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@ -95,7 +129,10 @@ class CheckCorporaMixin:
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if corpus.status == 'queued' and task_state != 'pending':
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corpus.status = 'running'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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elif (corpus.status == 'running'
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and task_state in ['complete', 'failed']):
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@ -104,39 +141,53 @@ class CheckCorporaMixin:
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except docker.errors.APIError as e:
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logging.error(
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'Remove "{}" service raised '.format(service_name)
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+ '"docker.errors.APIError" The server returned an error. '
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+ '"docker.errors.APIError" The server returned an error. ' # noqa
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+ 'Details: {}'.format(e)
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)
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return
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else:
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corpus.status = 'prepared' if task_state == 'complete' \
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else 'failed'
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corpus.status = \
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'prepared' if task_state == 'complete' else 'failed'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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def create_cqpserver_container(self, corpus):
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corpus_data_dir = os.path.join(corpus.path, 'data')
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corpus_registry_dir = os.path.join(corpus.path, 'registry')
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container_kwargs = {
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'command': 'cqpserver',
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'detach': True,
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'volumes': [corpus_data_dir + ':/corpora/data:rw',
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corpus_registry_dir + ':/usr/local/share/cwb/registry:rw'],
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'name': 'cqpserver_{}'.format(corpus.id),
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'network': 'nopaque_default'
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}
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container_image = \
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'gitlab.ub.uni-bielefeld.de:4567/sfb1288inf/cqpserver:latest'
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''' # Docker container settings # '''
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''' ## Command ## '''
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command = 'cqpserver'
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''' ## Detach ## '''
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detach = True
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''' ## Image ## '''
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image = current_app.config['DOCKER_IMAGE_PREFIX'] + 'cqpserver:latest'
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''' ## Name ## '''
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name = 'cqpserver_{}'.format(corpus.id),
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''' ## Network ## '''
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network = 'nopaque_default'
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''' ## Volumes ## '''
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''' ### Corpus data volume ### '''
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corpus_data_source = os.path.join(corpus.path, 'data')
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corpus_data_target = '/corpora/data'
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corpus_data_volume = \
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corpus_data_source + ':' + corpus_data_target + ':rw'
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''' ### Corpus registry volume ### '''
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corpus_registry_source = os.path.join(corpus.path, 'registry')
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corpus_registry_target = '/usr/local/share/cwb/registry'
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corpus_registry_volume = \
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corpus_registry_source + ':' + corpus_registry_target + ':rw'
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volumes = [corpus_data_volume, corpus_registry_volume]
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# Check if a cqpserver container already exists. If this is the case,
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# remove it and create a new one
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try:
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container = self.docker.containers.get(container_kwargs['name'])
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container = self.docker.containers.get(name)
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except docker.errors.NotFound:
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pass
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except docker.errors.APIError as e:
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logging.error(
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'Get "{}" container raised '.format(container_kwargs['name'])
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'Get "{}" container raised '.format(name)
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+ '"docker.errors.APIError" The server returned an error. '
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+ 'Details: {}'.format(e)
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)
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@ -146,45 +197,55 @@ class CheckCorporaMixin:
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container.remove(force=True)
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except docker.errors.APIError as e:
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logging.error(
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'Remove "{}" container raised '.format(
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container_kwargs['name'])
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'Remove "{}" container raised '.format(name)
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+ '"docker.errors.APIError" The server returned an error. '
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+ 'Details: {}'.format(e)
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)
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return
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try:
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self.docker.containers.run(container_image, **container_kwargs)
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self.docker.containers.run(image, command=command, detach=detach,
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volumes=volumes, name=name,
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network=network)
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except docker.errors.ContainerError:
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# This case should not occur, because detach is True.
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logging.error(
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'Run "{}" container raised '.format(container_kwargs['name'])
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'Run "{}" container raised '.format(name)
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+ '"docker.errors.ContainerError" The container exits with a '
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+ 'non-zero exit code and detach is False.'
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)
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corpus.status = 'failed'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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except docker.errors.ImageNotFound:
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logging.error(
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'Run "{}" container raised '.format(container_kwargs['name'])
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'Run "{}" container raised '.format(name)
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+ '"docker.errors.ImageNotFound" The specified image does not '
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+ 'exist.'
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)
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corpus.status = 'failed'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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except docker.errors.APIError as e:
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logging.error(
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'Run "{}" container raised '.format(container_kwargs['name'])
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'Run "{}" container raised '.format(name)
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+ '"docker.errors.APIError" The server returned an error. '
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+ 'Details: {}'.format(e)
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)
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else:
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corpus.status = 'analysing'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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def checkout_analysing_corpus_container(self, corpus):
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@ -194,6 +255,12 @@ class CheckCorporaMixin:
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except docker.errors.NotFound:
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logging.error('Could not find "{}" but the corpus state is "analysing".') # noqa
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corpus.status = 'prepared'
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patch_operation = {
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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except docker.errors.APIError as e:
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logging.error(
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'Get "{}" container raised '.format(container_name)
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@ -227,5 +294,8 @@ class CheckCorporaMixin:
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return
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corpus.status = 'prepared'
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patch_operation = {
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'op': 'replace', 'path': '/corpora/{}/status'.format(corpus.id), 'value': corpus.status}
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'op': 'replace',
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'path': '/corpora/{}/status'.format(corpus.id),
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'value': corpus.status
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}
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self.buffer_user_patch_operation(corpus, patch_operation)
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@ -1,16 +1,14 @@
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from datetime import datetime
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from flask import current_app
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from werkzeug.utils import secure_filename
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from .. import db, mail
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from ..email import create_message
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from ..models import Job, JobResult
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import docker
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import logging
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import json
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import logging
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import os
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DOCKER_REGISTRY = 'gitlab.ub.uni-bielefeld.de:4567'
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DOCKER_IMAGE_PREFIX = '{}/sfb1288inf/'.format(DOCKER_REGISTRY)
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import shutil
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class CheckJobsMixin:
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@ -28,54 +26,64 @@ class CheckJobsMixin:
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self.remove_job_service(job)
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def create_job_service(self, job):
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# Service specific settings
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''' # Docker service settings # '''
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''' ## Service specific settings ## '''
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if job.service == 'file-setup':
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mem_mb = 2048
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n_cores = 2
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executable = 'file-setup'
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image = DOCKER_IMAGE_PREFIX + 'file-setup:' + job.service_version
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image = (current_app.config['DOCKER_IMAGE_PREFIX']
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+ 'file-setup:' + job.service_version)
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elif job.service == 'ocr':
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mem_mb = 4096
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n_cores = 4
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executable = 'ocr'
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image = DOCKER_IMAGE_PREFIX + 'ocr:' + job.service_version
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image = (current_app.config['DOCKER_IMAGE_PREFIX']
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+ 'ocr:' + job.service_version)
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elif job.service == 'nlp':
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mem_mb = 2048
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n_cores = 2
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executable = 'nlp'
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image = DOCKER_IMAGE_PREFIX + 'nlp:' + job.service_version
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# Command
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image = (current_app.config['DOCKER_IMAGE_PREFIX']
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+ 'nlp:' + job.service_version)
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''' ## Command ## '''
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command = '{} -i /input -o /output'.format(executable)
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command += ' --log-dir /input'
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command += ' --mem-mb {}'.format(mem_mb)
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command += ' --n-cores {}'.format(n_cores)
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command += ' --zip [' + job.service + ']_' + secure_filename(job.title)
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command += ' ' + ' '.join(json.loads(job.service_args))
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# Constraints
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''' ## Constraints ## '''
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constraints = ['node.role==worker']
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# Labels
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labels = {'origin': 'nopaque', 'type': 'job', 'job_id': str(job.id)}
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# Mounts
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## Input mount
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''' ## Labels ## '''
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labels = {
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'origin': current_app.config['SERVER_NAME'],
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'type': 'job',
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'job_id': str(job.id)
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}
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''' ## Mounts ## '''
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''' ### Input mount ### '''
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input_mount_source = job.path
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input_mount_target = '/input'
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if job.service == 'file-setup':
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input_mount_target += '/' + secure_filename(job.title)
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input_mount = input_mount_source + ':' + input_mount_target + ':rw'
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## Output mount
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''' ### Output mount ### '''
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output_mount_source = os.path.join(job.path, 'output')
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output_mount_target = '/output'
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output_mount = output_mount_source + ':' + output_mount_target + ':rw'
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# Make sure that their is no data in the output directory
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shutil.rmtree(output_mount_source, ignore_errors=True)
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os.makedirs(output_mount_source)
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mounts = [input_mount, output_mount]
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# Name
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''' ## Name ## '''
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name = 'job_{}'.format(job.id)
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# Resources
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''' ## Resources ## '''
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resources = docker.types.Resources(
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cpu_reservation=n_cores * (10 ** 9),
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mem_reservation=mem_mb * (10 ** 6)
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)
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# Restart policy
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''' ## Restart policy ## '''
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restart_policy = docker.types.RestartPolicy()
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try:
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self.docker.services.create(
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@ -90,14 +98,18 @@ class CheckJobsMixin:
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)
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except docker.errors.APIError as e:
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logging.error(
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'Create "{}" service raised '.format(service_kwargs['name'])
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'Create "{}" service raised '.format(name)
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+ '"docker.errors.APIError" The server returned an error. '
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+ 'Details: {}'.format(e)
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)
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return
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else:
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job.status = 'queued'
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patch_operation = {'op': 'replace', 'path': '/jobs/{}/status'.format(job.id), 'value': job.status} # noqa
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patch_operation = {
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'op': 'replace',
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'path': '/jobs/{}/status'.format(job.id),
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'value': job.status
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}
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self.buffer_user_patch_operation(job, patch_operation)
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finally:
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self.send_job_notification(job)
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@ -107,11 +119,17 @@ class CheckJobsMixin:
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try:
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service = self.docker.services.get(service_name)
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except docker.errors.NotFound:
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logging.error('Get "{}" service raised '.format(service_name)
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+ '"docker.errors.NotFound" The service does not exist. '
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+ '(job.status: {} -> failed)'.format(job.status))
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logging.error(
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'Get "{}" service raised '.format(service_name)
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+ '"docker.errors.NotFound" The service does not exist. '
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+ '(job.status: {} -> failed)'.format(job.status)
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)
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job.status = 'failed'
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patch_operation = {'op': 'replace', 'path': '/jobs/{}/status'.format(job.id), 'value': job.status} # noqa
|
||||
patch_operation = {
|
||||
'op': 'replace',
|
||||
'path': '/jobs/{}/status'.format(job.id),
|
||||
'value': job.status
|
||||
}
|
||||
self.buffer_user_patch_operation(job, patch_operation)
|
||||
except docker.errors.APIError as e:
|
||||
logging.error(
|
||||
@ -134,9 +152,13 @@ class CheckJobsMixin:
|
||||
task_state = service_tasks[0].get('Status').get('State')
|
||||
if job.status == 'queued' and task_state != 'pending':
|
||||
job.status = 'running'
|
||||
patch_operation = {'op': 'replace', 'path': '/jobs/{}/status'.format(job.id), 'value': job.status} # noqa
|
||||
patch_operation = {
|
||||
'op': 'replace',
|
||||
'path': '/jobs/{}/status'.format(job.id),
|
||||
'value': job.status
|
||||
}
|
||||
self.buffer_user_patch_operation(job, patch_operation)
|
||||
elif job.status == 'running' and task_state in ['complete', 'failed']:
|
||||
elif job.status == 'running' and task_state in ['complete', 'failed']: # noqa
|
||||
try:
|
||||
service.remove()
|
||||
except docker.errors.APIError as e:
|
||||
@ -156,13 +178,25 @@ class CheckJobsMixin:
|
||||
db.session.add(job_result)
|
||||
db.session.flush()
|
||||
db.session.refresh(job_result)
|
||||
patch_operation = {'op': 'add', 'path': '/jobs/{}/results/{}'.format(job.id, job_result.id), 'value': job_result.to_dict()} # noqa
|
||||
patch_operation = {
|
||||
'op': 'add',
|
||||
'path': '/jobs/{}/results/{}'.format(job.id, job_result.id), # noqa
|
||||
'value': job_result.to_dict()
|
||||
}
|
||||
self.buffer_user_patch_operation(job, patch_operation) # noqa
|
||||
job.end_date = datetime.utcnow()
|
||||
patch_operation = {'op': 'replace', 'path': '/jobs/{}/end_date'.format(job.id), 'value': job.end_date.timestamp()} # noqa
|
||||
patch_operation = {
|
||||
'op': 'replace',
|
||||
'path': '/jobs/{}/end_date'.format(job.id),
|
||||
'value': job.end_date.timestamp()
|
||||
}
|
||||
self.buffer_user_patch_operation(job, patch_operation)
|
||||
job.status = task_state
|
||||
patch_operation = {'op': 'replace', 'path': '/jobs/{}/status'.format(job.id), 'value': job.status} # noqa
|
||||
patch_operation = {
|
||||
'op': 'replace',
|
||||
'path': '/jobs/{}/status'.format(job.id),
|
||||
'value': job.status
|
||||
}
|
||||
self.buffer_user_patch_operation(job, patch_operation)
|
||||
finally:
|
||||
self.send_job_notification(job)
|
||||
@ -173,7 +207,11 @@ class CheckJobsMixin:
|
||||
service = self.docker.services.get(service_name)
|
||||
except docker.errors.NotFound:
|
||||
job.status = 'canceled'
|
||||
patch_operation = {'op': 'replace', 'path': '/jobs/{}/status'.format(job.id), 'value': job.status} # noqa
|
||||
patch_operation = {
|
||||
'op': 'replace',
|
||||
'path': '/jobs/{}/status'.format(job.id),
|
||||
'value': job.status
|
||||
}
|
||||
self.buffer_user_patch_operation(job, patch_operation)
|
||||
except docker.errors.APIError as e:
|
||||
logging.error(
|
||||
@ -214,7 +252,10 @@ class CheckJobsMixin:
|
||||
if (job.creator.setting_job_status_mail_notifications == 'end'
|
||||
and job.status not in ['complete', 'failed']):
|
||||
return
|
||||
msg = create_message(job.creator.email,
|
||||
'Status update for your Job "{}"'.format(job.title), # noqa
|
||||
'tasks/email/notification', job=job)
|
||||
msg = create_message(
|
||||
job.creator.email,
|
||||
'Status update for your Job "{}"'.format(job.title), # noqa
|
||||
'tasks/email/notification',
|
||||
job=job
|
||||
)
|
||||
mail.send(msg)
|
||||
|
||||
@ -7,6 +7,10 @@ ROOT_DIR = os.path.abspath(os.path.dirname(__file__))
|
||||
|
||||
|
||||
class Config:
|
||||
''' # Docker # '''
|
||||
DOCKER_REGISTRY = 'gitlab.ub.uni-bielefeld.de:4567'
|
||||
DOCKER_IMAGE_PREFIX = DOCKER_REGISTRY + '/sfb1288inf/'
|
||||
|
||||
''' # Flask # '''
|
||||
PREFERRED_URL_SCHEME = os.environ.get('PREFERRED_URL_SCHEME', 'http')
|
||||
SECRET_KEY = os.environ.get('SECRET_KEY', 'hard to guess string')
|
||||
|
||||
Loading…
Reference in New Issue
Block a user