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Add missing argument to wrapper script

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This commit is contained in:
Patrick Jentsch 2021-04-12 09:20:28 +02:00
parent 72409bd12d
commit 8105edfd1b
1 changed files with 16 additions and 12 deletions
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wrapper/nlp
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@ -8,25 +8,29 @@ import subprocess
CONTAINER_IMAGE = 'gitlab.ub.uni-bielefeld.de:4567/sfb1288inf/nlp:1.0.0'
CONTAINER_INPUT_DIR = '/input'
CONTAINER_OUTPUT_DIR = '/output'
CONTAINER_LOG_DIR = '/logs'
UID = str(os.getuid())
GID = str(os.getgid())
parser = ArgumentParser(add_help=False)
parser.add_argument('-i', '--input-directory')
parser.add_argument('-o', '--output-directory')
parser.add_argument('-i', '--input-dir')
parser.add_argument('-o', '--output-dir')
parser.add_argument('--log-dir')
args, remaining_args = parser.parse_known_args()
cmd = ['docker', 'run', '--rm', '-it', '-u', '{}:{}'.format(UID, GID)]
if args.output_directory is not None:
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.output_directory),
CONTAINER_OUTPUT_DIR)]
remaining_args.insert(0, CONTAINER_OUTPUT_DIR)
remaining_args.insert(0, '-o')
if args.input_directory is not None:
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.input_directory),
CONTAINER_INPUT_DIR)]
remaining_args.insert(0, CONTAINER_INPUT_DIR)
remaining_args.insert(0, '-i')
if args.input_dir is not None:
mapping = os.path.abspath(args.input_dir) + ':' + CONTAINER_INPUT_DIR
cmd += ['-v', mapping]
remaining_args += ['-i', CONTAINER_INPUT_DIR]
if args.output_dir is not None:
mapping = os.path.abspath(args.output_dir) + ':' + CONTAINER_OUTPUT_DIR
cmd += ['-v', mapping]
remaining_args += ['-o', CONTAINER_OUTPUT_DIR]
if args.log_dir is not None:
mapping = os.path.abspath(args.log_dir) + ':' + CONTAINER_LOG_DIR
cmd += ['-v', mapping]
remaining_args += ['--log-dir', CONTAINER_LOG_DIR]
cmd.append(CONTAINER_IMAGE)
cmd += remaining_args