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Fix race condition
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54f336e620
commit
72409bd12d
4
nlp
4
nlp
@ -89,6 +89,7 @@ class NLPPipeline(WorkflowRunner):
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' # vrt creation #
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' ##################################################
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'''
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vrt_creation_tasks = []
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for i, job in enumerate(self.jobs):
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output_file = os.path.join(job.output_dir, '{}.vrt'.format(job.name)) # noqa
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nlp_file = os.path.join(job.output_dir, '{}.nopaque-stand-off.json'.format(job.name)) # noqa
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@ -99,6 +100,7 @@ class NLPPipeline(WorkflowRunner):
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deps = 'nlp_-_{}'.format(i)
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lbl = 'vrt_creation_-_{}'.format(i)
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task = self.addTask(command=cmd, dependencies=deps, label=lbl)
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vrt_creation_tasks.append(task)
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'''
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' ##################################################
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@ -116,7 +118,7 @@ class NLPPipeline(WorkflowRunner):
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cmd += ' -i "*.vrt" "*.json"'
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cmd += ' && '
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cmd += 'cd -'
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deps = nlp_tasks
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deps = vrt_creation_tasks
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lbl = 'zip_creation'
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task = self.addTask(command=cmd, dependencies=deps, label=lbl)
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zip_creation_tasks.append(task)
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