mirror of
https://gitlab.ub.uni-bielefeld.de/sfb1288inf/ocr.git
synced 2024-12-26 04:54:18 +00:00
fix pipeline
This commit is contained in:
Patrick Jentsch
parent
ec5b4eb521
commit
aee9628e5e
501
ocr
501
ocr
@ -24,33 +24,30 @@ TESSERACT_MODELS = ['deu', 'eng', 'enm', 'fra', 'frk', 'frm', 'ita', 'por',
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def parse_args():
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parser = ArgumentParser(description='OCR Pipeline utilizing tesseract.')
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parser.add_argument('i', help='Input directory for OCR. One PDf equals one\
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job')
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parser.add_argument('o', help='Output directory containing OCR results.')
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parser.add_argument('-i', '--input-directory',
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help='Input directory (only PDF files get processed)',
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required=True)
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parser.add_argument('-o', '--output-directory',
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help='Output directory',
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required=True)
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parser.add_argument('-l', '--language',
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choices=TESSERACT_MODELS,
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required=True)
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parser.add_argument('--binarize',
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action='store_true',
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help='Use ocropy binarisation as preprocessing step.')
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parser.add_argument('--keep-intermediates',
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parser.add_argument('--compress',
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action='store_true',
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help='Keep intermediate files for debugging etc.',
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required=False)
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help='Compress the final PDF result file.')
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parser.add_argument('--log-dir')
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parser.add_argument('--n-cores',
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default=min(4, multiprocessing.cpu_count()),
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help='Total number of cores available.',
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type=int,
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required=False)
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parser.add_argument('--zip', help='Zips all results in different archives \
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depending on result types. Also zips \
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everything into one archive.',
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required=False)
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parser.add_argument('-c', '--compress',
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help='Compress the final PDF result file.',
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required=False,
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action='store_true')
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parser.add_argument('--log_dir')
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type=int)
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parser.add_argument('--zip',
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help='Zips all results in different archives depending'
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' on result types. Also zips everything into one '
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'archive.')
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return parser.parse_args()
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@ -62,11 +59,10 @@ class OCRPipelineJob:
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class OCRPipeline(WorkflowRunner):
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def __init__(self, binarize, jobs, keep_intermediates, lang, n_cores,
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output_dir, zip, compress):
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def __init__(self, binarize, jobs, lang, n_cores, output_dir, zip,
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compress):
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self.binarize = binarize
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self.jobs = jobs
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self.keep_intermediates = keep_intermediates
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self.lang = lang
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self.n_cores = n_cores
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self.output_dir = output_dir
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@ -79,36 +75,26 @@ class OCRPipeline(WorkflowRunner):
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'''
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' ##################################################
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' # mkdir_jobs #
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' # setup output directory #
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' ##################################################
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'''
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mkdir_jobs = []
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setup_output_directory_jobs = []
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for i, job in enumerate(self.jobs):
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output_dir = os.path.join(job.output_dir, 'tmp')
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poco_dir = os.path.join(job.output_dir, 'PoCo')
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intermediate_dir = os.path.join(job.output_dir, 'tmp')
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cmd = 'mkdir'
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cmd += ' -p'
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cmd += ' "{}"'.format(output_dir)
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cmd += ' "{}"'.format(os.path.join(poco_dir, 'hocr'))
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cmd += ' "{}"'.format(os.path.join(poco_dir, 'tiff'))
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if self.keep_intermediates:
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cmd += ' "{}"'.format(os.path.join(output_dir, 'hocr'))
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cmd += ' "{}"'.format(os.path.join(output_dir, 'pdf'))
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cmd += ' "{}"'.format(os.path.join(output_dir, 'tiff'))
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cmd += ' "{}"'.format(os.path.join(output_dir, 'txt'))
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if self.binarize:
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cmd += ' "{}"'.format(os.path.join(output_dir, 'bin.png'))
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cmd += ' "{}"'.format(os.path.join(output_dir, 'nrm.png'))
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lbl = 'mkdir_job_-_{}'.format(i)
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mkdir_jobs.append(self.addTask(command=cmd, label=lbl))
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cmd += ' "{}"'.format(intermediate_dir)
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cmd += ' "{}"'.format(os.path.join(job.output_dir, 'poco'))
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lbl = 'setup_output_directory_-_{}'.format(i)
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setup_output_directory_jobs.append(self.addTask(command=cmd,
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label=lbl))
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'''
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' ##################################################
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' # pdftoppm_jobs #
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' # split input #
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' ##################################################
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'''
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pdftoppm_jobs = []
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split_input_jobs = []
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n_cores = min(self.n_cores, max(1, int(self.n_cores / len(self.jobs))))
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for i, job in enumerate(self.jobs):
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output_dir = os.path.join(job.output_dir, 'tmp')
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@ -118,24 +104,26 @@ class OCRPipeline(WorkflowRunner):
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cmd += ' -tiff'
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cmd += ' -tiffcompression lzw'
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cmd += ' "{}" "{}"'.format(job.file, output_file_base)
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deps = mkdir_jobs
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lbl = 'pdftoppm_job_-_{}'.format(i)
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pdftoppm_jobs.append(self.addTask(command=cmd, dependencies=deps,
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label=lbl, nCores=n_cores))
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deps = 'setup_output_directory_-_{}'.format(i)
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lbl = 'split_input_-_{}'.format(i)
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split_input_jobs.append(self.addTask(command=cmd,
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dependencies=deps,
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label=lbl,
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nCores=n_cores))
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if self.binarize:
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'''
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' The ocropus_nlbin_jobs list is created based on the output files
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' of the pdftoppm_jobs. So wait until they are finished.
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' The binarization_jobs list is created based on the output files
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' of the split_jobs. So wait until they are finished.
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'''
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self.waitForTasks()
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'''
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' ##################################################
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' # ocropus_nlbin_jobs #
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' # binarization #
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' ##################################################
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'''
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ocropus_nlbin_jobs = []
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binarization_jobs = []
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'''
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' We run ocropus-nlbin with either four or, if there are less then
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' four cores available for this workflow, the available core
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@ -152,24 +140,25 @@ class OCRPipeline(WorkflowRunner):
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cmd = 'ocropus-nlbin "{}"'.format('" "'.join(files))
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cmd += ' -o "{}"'.format(output_dir)
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cmd += ' -Q "{}"'.format(n_cores)
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deps = pdftoppm_jobs
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lbl = 'ocropus_nlbin_job_-_{}'.format(i)
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ocropus_nlbin_jobs.append(
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self.addTask(command=cmd, dependencies=deps, label=lbl,
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nCores=n_cores))
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deps = 'split_input_-_{}'.format(i)
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lbl = 'binarization_-_{}'.format(i)
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binarization_jobs.append(self.addTask(command=cmd,
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dependencies=deps,
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label=lbl,
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nCores=n_cores))
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'''
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' The post_ocropus_nlbin_jobs are created based on the output files
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' of the ocropus_nlbin_jobs. So wait until they are finished.
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' The post_binarization_jobs are created based on the output files
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' of the binarization_jobs. So wait until they are finished.
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'''
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self.waitForTasks()
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'''
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' ##################################################
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' # post_ocropus_nlbin_jobs #
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' # post binarization #
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' ##################################################
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'''
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post_ocropus_nlbin_jobs = []
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post_binarization_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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output_dir = input_dir
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@ -182,26 +171,26 @@ class OCRPipeline(WorkflowRunner):
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output_file = os.path.join(output_dir, 'page-{}.bin.png'.format(int(file.split('.', 1)[0]))) # noqa
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cmd = 'mv "{}" "{}"'.format(os.path.join(output_dir, file),
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output_file)
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deps = ocropus_nlbin_jobs
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lbl = 'post_ocropus_nlbin_job_-_{}-{}'.format(i, number)
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post_ocropus_nlbin_jobs.append(
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self.addTask(command=cmd, dependencies=deps,
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label=lbl))
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deps = 'binarization_-_{}'.format(i)
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lbl = 'post_binarization_-_{}-{}'.format(i, number)
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post_binarization_jobs.append(
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self.addTask(command=cmd, dependencies=deps, label=lbl)
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)
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number += 1
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'''
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' The tesseract_jobs are created based of the output files of either
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' the pdftoppm_jobs or post_ocropus_nlbin_jobs. So wait until they are
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' The ocr_jobs are created based of the output files of either the
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' split_jobs or post_binarization_jobs. So wait until they are
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' finished.
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'''
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self.waitForTasks()
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'''
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' ##################################################
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' # tesseract_jobs #
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' # ocr #
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' ##################################################
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'''
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tesseract_jobs = []
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ocr_jobs = []
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'''
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' Tesseract runs fastest with four cores. So we run it with either four
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' or, if there are less then four cores available for this workflow,
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@ -211,8 +200,7 @@ class OCRPipeline(WorkflowRunner):
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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output_dir = input_dir
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files = filter(lambda x: x.endswith('.bin.png' if self.binarize else '.tif'), # noqa
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os.listdir(input_dir))
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files = filter(lambda x: x.endswith('.bin.png' if self.binarize else '.tif'), os.listdir(input_dir)) # noqa
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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number = 0
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@ -221,14 +209,17 @@ class OCRPipeline(WorkflowRunner):
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cmd = 'tesseract "{}" "{}"'.format(file, output_file_base)
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cmd += ' -l "{}"'.format(self.lang)
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cmd += ' hocr pdf txt'
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cmd += ' && '
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cmd += 'sed -i \'s+{}/++g\' "{}".hocr'.format(input_dir, output_file_base) # noqa
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if self.binarize:
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deps = post_ocropus_nlbin_jobs
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deps = 'post_binarization_-_{}-{}'.format(i, number)
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else:
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deps = pdftoppm_jobs
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label = 'tesseract_jobs_-_{}-{}'.format(i, number)
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tesseract_jobs.append(
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self.addTask(command=cmd, dependencies=deps, label=label,
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nCores=n_cores))
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deps = 'split_input_-_{}'.format(i)
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label = 'ocr_-_{}-{}'.format(i, number)
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ocr_jobs.append(self.addTask(command=cmd,
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dependencies=deps,
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label=label,
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nCores=n_cores))
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number += 1
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'''
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@ -239,190 +230,171 @@ class OCRPipeline(WorkflowRunner):
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'''
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' ##################################################
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' # hocrtotei_jobs #
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' # combined pdf creation #
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' ##################################################
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'''
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hocrtotei_jobs = []
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combined_pdf_creation_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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files = filter(lambda x: x.endswith('.hocr'),
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files = filter(lambda x: x.endswith('.pdf'),
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os.listdir(input_dir))
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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output_file = os.path.join(job.output_dir,
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'{}.xml'.format(job.name))
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cmd = 'hocrtotei "{}" "{}"'.format('" "'.join(files), output_file)
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deps = tesseract_jobs
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lbl = 'hocrtotei_job_-_{}'.format(i)
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hocrtotei_jobs.append(self.addTask(command=cmd, dependencies=deps,
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label=lbl))
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'''
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' ##################################################
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' # hocr_poco_jobs #
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' ##################################################
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'''
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hocr_poco_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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files = filter(lambda x: x.endswith('.hocr'),
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os.listdir(input_dir))
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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# set relative file paths into hocr
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relative_files = map(lambda x: os.path.join('..',
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'tiff',
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os.path.basename(x).replace('.hocr', '.tif')), # noqa
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files)
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for file, relative_file in zip(files, relative_files):
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with open(file, 'r+') as f:
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html = f.read()
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html = html.replace(file.replace('.hocr', '.tif'),
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relative_file)
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f.seek(0)
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f.truncate(0) # deletes content of file to write new html
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f.write(html)
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output_path_base = os.path.join(job.output_dir, 'PoCo')
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output_path = os.path.join(output_path_base, 'hocr')
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cmd = 'cp "{}" "{}"'.format('" "'.join(files), output_path)
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deps = tesseract_jobs
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lbl = 'hocr_poco_jobs-_{}'.format(i)
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hocr_poco_jobs.append(self.addTask(command=cmd, dependencies=deps,
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label=lbl))
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'''
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' ##################################################
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' # tiff_poco_jobs #
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' ##################################################
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'''
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tiff_poco_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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files = filter(lambda x: x.endswith('.tif'),
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os.listdir(input_dir))
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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output_path_base = os.path.join(job.output_dir, 'PoCo')
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output_path = os.path.join(output_path_base, 'tiff')
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cmd = 'cp "{}" "{}"'.format('" "'.join(files), output_path)
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deps = tesseract_jobs
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lbl = 'tiff_poco_jobs-_{}'.format(i)
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tiff_poco_jobs.append(self.addTask(command=cmd, dependencies=deps,
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label=lbl))
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'''
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' ##################################################
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' # pdfunite_jobs #
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' ##################################################
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'''
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pdfunite_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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files = filter(lambda x: x.endswith('.pdf'), os.listdir(input_dir))
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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output_file = os.path.join(job.output_dir,
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'{}.pdf'.format(job.name))
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cmd = 'pdfunite "{}" "{}"'.format('" "'.join(files), output_file)
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deps = tesseract_jobs
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lbl = 'pdfunite_job_-_{}'.format(i)
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pdfunite_jobs.append(self.addTask(command=cmd, dependencies=deps,
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label=lbl))
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deps = filter(lambda x: x.startswith('ocr_-_{}'.format(i)),
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ocr_jobs)
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lbl = 'combined_pdf_creation_-_{}'.format(i)
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combined_pdf_creation_jobs.append(self.addTask(command=cmd,
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dependencies=deps,
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label=lbl))
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'''
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' ##################################################
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' # cat_jobs #
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' # combined txt creation #
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' ##################################################
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'''
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cat_jobs = []
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combined_txt_creation_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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files = filter(lambda x: x.endswith('.txt'), os.listdir(input_dir))
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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output_file = os.path.join(job.output_dir,
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'{}.txt'.format(job.name))
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output_file = os.path.join(job.output_dir, '{}.txt'.format(job.name)) # noqa
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cmd = 'cat "{}" > "{}"'.format('" "'.join(files), output_file)
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deps = tesseract_jobs
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lbl = 'cat_job_-_{}'.format(i)
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cat_jobs.append(self.addTask(command=cmd, dependencies=deps,
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label=lbl))
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deps = filter(lambda x: x.startswith('ocr_-_{}'.format(i)),
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ocr_jobs)
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lbl = 'combined_txt_creation_-_{}'.format(i)
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combined_txt_creation_jobs.append(self.addTask(command=cmd,
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dependencies=deps,
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label=lbl))
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'''
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' ##################################################
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' # tei p5 creation #
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' ##################################################
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'''
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tei_p5_creation_jobs = []
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for i, job in enumerate(self.jobs):
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input_dir = os.path.join(job.output_dir, 'tmp')
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files = filter(lambda x: x.endswith('.hocr'), os.listdir(input_dir)) # noqa
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files.sort(key=lambda x: int(re.search(r'\d+', x).group(0)))
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files = map(lambda x: os.path.join(input_dir, x), files)
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output_file = os.path.join(job.output_dir, '{}.xml'.format(job.name)) # noqa
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cmd = 'hocrtotei "{}" "{}"'.format('" "'.join(files), output_file)
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deps = filter(lambda x: x.startswith('ocr_-_{}'.format(i)),
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ocr_jobs)
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lbl = 'tei_p5_creation_-_{}'.format(i)
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tei_p5_creation_jobs.append(self.addTask(command=cmd,
|
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dependencies=deps,
|
||||
label=lbl))
|
||||
|
||||
'''
|
||||
' ##################################################
|
||||
' # poco bundle creation #
|
||||
' ##################################################
|
||||
'''
|
||||
poco_bundle_creation_jobs = []
|
||||
for i, job in enumerate(self.jobs):
|
||||
input_dir = os.path.join(job.output_dir, 'tmp')
|
||||
output_dir = os.path.join(job.output_dir, 'poco')
|
||||
cmd = 'mv "{}"/*.hocr "{}"'.format(input_dir, output_dir)
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}"/*.{} "{}"'.format(input_dir, 'bin.png' if self.binarize else 'tif', output_dir) # noqa
|
||||
deps = filter(lambda x: x.startswith('ocr_-_{}'.format(i)),
|
||||
ocr_jobs)
|
||||
deps.append('tei_p5_creation_-_{}'.format(i))
|
||||
lbl = 'poco_bundle_creation_-_{}'.format(i)
|
||||
poco_bundle_creation_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
|
||||
'''
|
||||
' The following jobs are created based of the output files of the
|
||||
' pdfunite_jobs. So wait until they are finished.
|
||||
' combined_pdf_creation_jobs. So wait until they are finished.
|
||||
'''
|
||||
self.waitForTasks()
|
||||
|
||||
'''
|
||||
' ##################################################
|
||||
' # compress_jobs #
|
||||
' # pdf compression #
|
||||
' ##################################################
|
||||
'''
|
||||
compress_jobs = []
|
||||
pdf_compression_jobs = []
|
||||
if self.compress:
|
||||
for i, job in enumerate(self.jobs):
|
||||
print(os.listdir(job.output_dir))
|
||||
file = filter(lambda x: x.endswith('.pdf'),
|
||||
os.listdir(job.output_dir))[0]
|
||||
file = filter(lambda x: x.endswith('.pdf'), os.listdir(job.output_dir))[0] # noqa
|
||||
original_file = os.path.join(job.output_dir, file)
|
||||
compressed_file = os.path.join(job.output_dir, 'c_' + file)
|
||||
cmd = ('gs '
|
||||
+ '-sDEVICE=pdfwrite '
|
||||
+ '-dCompatibilityLevel=1.4 '
|
||||
+ '-dPDFSETTINGS=/ebook '
|
||||
+ '-dNOPAUSE '
|
||||
+ '-dQUIET '
|
||||
+ '-dBATCH '
|
||||
+ '-sOutputFile={o} {i} ').format(o=compressed_file,
|
||||
i=original_file)
|
||||
cmd += '&& rm {original_f} '.format(original_f=original_file)
|
||||
cmd += ('&& mv {compressed_f} '
|
||||
+ '{original_f} ').format(compressed_f=compressed_file,
|
||||
original_f=original_file)
|
||||
deps = (hocrtotei_jobs
|
||||
+ tesseract_jobs
|
||||
+ pdfunite_jobs
|
||||
+ cat_jobs
|
||||
+ hocr_poco_jobs
|
||||
+ tiff_poco_jobs)
|
||||
lbl = 'compress_job_-_{}'.format(i)
|
||||
compress_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
cmd = 'gs'
|
||||
cmd += ' -sDEVICE=pdfwrite'
|
||||
cmd += ' -dCompatibilityLevel=1.4'
|
||||
cmd += ' -dPDFSETTINGS=/ebook'
|
||||
cmd += ' -dNOPAUSE'
|
||||
cmd += ' -dQUIET'
|
||||
cmd += ' -dBATCH'
|
||||
cmd += ' -sOutputFile="{}"'.format(compressed_file)
|
||||
cmd += ' "{}"'.format(original_file)
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}" "{}"'.format(compressed_file, original_file)
|
||||
deps = 'combined_pdf_creation_-_{}'.format(i)
|
||||
lbl = 'pdf_compression_-_{}'.format(i)
|
||||
pdf_compression_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
|
||||
'''
|
||||
' ##################################################
|
||||
' # zip_jobs #
|
||||
' # cleanup #
|
||||
' ##################################################
|
||||
'''
|
||||
zip_jobs = []
|
||||
deps = (hocrtotei_jobs
|
||||
+ tesseract_jobs
|
||||
+ pdfunite_jobs
|
||||
+ cat_jobs
|
||||
+ hocr_poco_jobs
|
||||
+ tiff_poco_jobs
|
||||
+ compress_jobs)
|
||||
cleanup_jobs = []
|
||||
for i, job in enumerate(self.jobs):
|
||||
input_dir = os.path.join(job.output_dir, 'tmp')
|
||||
cmd = 'rm -r "{}"'.format(input_dir)
|
||||
if self.compress:
|
||||
deps = ['pdf_compression_-_{}'.format(i)]
|
||||
else:
|
||||
deps = ['combined_pdf_creation_-_{}'.format(i)]
|
||||
deps.append('combined_txt_creation_-_{}'.format(i))
|
||||
deps.append('poco_bundle_creation_-_{}'.format(i))
|
||||
deps.append('tei_p5_creation_-_{}'.format(i))
|
||||
lbl = 'cleanup_-_{}'.format(i)
|
||||
cleanup_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
|
||||
'''
|
||||
' ##################################################
|
||||
' # zip creation #
|
||||
' ##################################################
|
||||
'''
|
||||
zip_creation_jobs = []
|
||||
if self.zip is not None:
|
||||
# Remove .zip file extension if provided
|
||||
if self.zip.endswith('.zip'):
|
||||
self.zip = self.zip[:-4]
|
||||
self.zip = self.zip if self.zip else 'output'
|
||||
# zip ALL
|
||||
# zip all files
|
||||
cmd = 'cd "{}"'.format(self.output_dir)
|
||||
cmd += ' && '
|
||||
cmd += 'zip'
|
||||
cmd += ' -r'
|
||||
cmd += ' "{}".all.zip .'.format(self.zip)
|
||||
cmd += ' -x "pyflow.data*" "*tmp*"'
|
||||
cmd += ' -i "*.pdf" "*.txt" "*.xml" "*.hocr" "*.tif"'
|
||||
cmd += ' -i "*.pdf" "*.txt" "*.xml" "*.hocr" "*.{}"'.format('bin.png' if self.binarize else 'tif') # noqa
|
||||
cmd += ' && '
|
||||
cmd += 'cd -'
|
||||
lbl = 'zip_job_-_all'
|
||||
zip_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
# zip PDFs
|
||||
deps = (pdf_compression_jobs if self.compress else
|
||||
combined_pdf_creation_jobs)
|
||||
deps += combined_txt_creation_jobs
|
||||
deps += poco_bundle_creation_jobs
|
||||
lbl = 'zip_creation_-_all'
|
||||
zip_creation_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
# zip PDF files
|
||||
cmd = 'cd "{}"'.format(self.output_dir)
|
||||
cmd += ' && '
|
||||
cmd += 'zip'
|
||||
@ -432,11 +404,13 @@ class OCRPipeline(WorkflowRunner):
|
||||
cmd += ' -i "*.pdf"'
|
||||
cmd += ' && '
|
||||
cmd += 'cd -'
|
||||
deps = deps + ['zip_job_-_all']
|
||||
lbl = 'zip_job_-_pdf'
|
||||
zip_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
# zip TXTs
|
||||
deps = (pdf_compression_jobs if self.compress else
|
||||
combined_pdf_creation_jobs)
|
||||
lbl = 'zip_creation_-_pdf'
|
||||
zip_creation_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
# zip TXT files
|
||||
cmd = 'cd "{}"'.format(self.output_dir)
|
||||
cmd += ' && '
|
||||
cmd += 'zip'
|
||||
@ -446,11 +420,12 @@ class OCRPipeline(WorkflowRunner):
|
||||
cmd += ' -i "*.txt"'
|
||||
cmd += ' && '
|
||||
cmd += 'cd -'
|
||||
deps = deps + ['zip_job_-_all']
|
||||
lbl = 'zip_job_-_txt'
|
||||
zip_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
# zip XMLs
|
||||
deps = combined_txt_creation_jobs
|
||||
lbl = 'zip_creation_-_txt'
|
||||
zip_creation_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
# zip XML files
|
||||
cmd = 'cd "{}"'.format(self.output_dir)
|
||||
cmd += ' && '
|
||||
cmd += 'zip'
|
||||
@ -460,80 +435,26 @@ class OCRPipeline(WorkflowRunner):
|
||||
cmd += ' -i "*.xml"'
|
||||
cmd += ' && '
|
||||
cmd += 'cd -'
|
||||
deps = deps + ['zip_job_-_all']
|
||||
lbl = 'zip_job_-_xml'
|
||||
zip_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
# zip PoCo files
|
||||
poco_paths = []
|
||||
poco_names = []
|
||||
for i, job in enumerate(self.jobs):
|
||||
poco_paths.append(os.path.join(os.path.basename(job.output_dir), # noqa
|
||||
'PoCo'))
|
||||
poco_names.append(job.output_dir)
|
||||
|
||||
deps = tei_p5_creation_jobs
|
||||
lbl = 'zip_creation_-_xml'
|
||||
zip_creation_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
# zip PoCo bundles
|
||||
cmd = 'cd "{}"'.format(self.output_dir)
|
||||
cmd += ' && '
|
||||
cmd += 'zip'
|
||||
cmd += ' -r'
|
||||
cmd += ' "{}".poco.zip'.format(self.zip)
|
||||
cmd += ' "{}"'.format('" "'.join(poco_paths))
|
||||
cmd += ' "{}".poco.zip .'.format(self.zip)
|
||||
cmd += ' -x "pyflow.data*" "*tmp*"'
|
||||
cmd += ' -i "*.hocr" "*.{}"'.format('bin.png' if self.binarize else 'tif') # noqa
|
||||
cmd += ' && '
|
||||
cmd += 'cd -'
|
||||
deps = deps + ['zip_job_-_all']
|
||||
lbl = 'zip_job_-_poco_{}'.format(i)
|
||||
zip_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
|
||||
'''
|
||||
' ##################################################
|
||||
' # mv_jobs #
|
||||
' ##################################################
|
||||
'''
|
||||
mv_jobs = []
|
||||
if self.keep_intermediates:
|
||||
for i, job in enumerate(self.jobs):
|
||||
input_dir = os.path.join(job.output_dir, 'tmp')
|
||||
output_dir = input_dir
|
||||
cmd = 'mv "{}"/*.hocr "{}"'.format(
|
||||
input_dir, os.path.join(output_dir, 'hocr'))
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}"/*.pdf "{}"'.format(input_dir, os.path.join(output_dir, 'pdf')) # noqa
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}"/*.tif "{}"'.format(input_dir, os.path.join(output_dir, 'tiff')) # noqa
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}"/*.txt "{}"'.format(input_dir, os.path.join(output_dir, 'txt')) # noqa
|
||||
if self.binarize:
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}"/*.bin.png "{}"'.format(input_dir, os.path.join(output_dir, 'bin.png')) # noqa
|
||||
cmd += ' && '
|
||||
cmd += 'mv "{}"/*.nrm.png "{}"'.format(input_dir, os.path.join(output_dir, 'nrm.png')) # noqa
|
||||
deps = (hocrtotei_jobs
|
||||
+ tesseract_jobs
|
||||
+ pdfunite_jobs
|
||||
+ cat_jobs
|
||||
+ hocr_poco_jobs
|
||||
+ tiff_poco_jobs,
|
||||
+ compress_jobs
|
||||
+ zip_jobs)
|
||||
lbl = 'mv_job_-_{}'.format(i)
|
||||
mv_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
else:
|
||||
for i, job in enumerate(self.jobs):
|
||||
input_dir = os.path.join(job.output_dir, 'tmp')
|
||||
cmd = 'rm -r "{}"'.format(input_dir)
|
||||
deps = (hocrtotei_jobs
|
||||
+ tesseract_jobs
|
||||
+ pdfunite_jobs
|
||||
+ cat_jobs
|
||||
+ hocr_poco_jobs
|
||||
+ tiff_poco_jobs
|
||||
+ compress_jobs
|
||||
+ zip_jobs)
|
||||
lbl = 'mv_job_-_{}'.format(i)
|
||||
mv_jobs.append(self.addTask(command=cmd, dependencies=deps,
|
||||
label=lbl))
|
||||
deps = poco_bundle_creation_jobs
|
||||
lbl = 'zip_creation_-_poco'
|
||||
zip_creation_jobs.append(self.addTask(command=cmd,
|
||||
dependencies=deps,
|
||||
label=lbl))
|
||||
|
||||
|
||||
def collect_jobs(input_dir, output_dir):
|
||||
@ -550,12 +471,14 @@ def collect_jobs(input_dir, output_dir):
|
||||
|
||||
def main():
|
||||
args = parse_args()
|
||||
jobs = collect_jobs(args.i, args.o)
|
||||
ocr_pipeline = OCRPipeline(args.binarize, jobs, args.keep_intermediates,
|
||||
args.language, args.n_cores, args.o, args.zip,
|
||||
jobs = collect_jobs(args.input_directory, args.output_directory)
|
||||
ocr_pipeline = OCRPipeline(args.binarize, jobs, args.language,
|
||||
args.n_cores, args.output_directory, args.zip,
|
||||
args.compress)
|
||||
retval = ocr_pipeline.run(dataDirRoot=(args.log_dir or args.o),
|
||||
nCores=args.n_cores)
|
||||
retval = ocr_pipeline.run(
|
||||
dataDirRoot=(args.log_dir or args.output_directory),
|
||||
nCores=args.n_cores
|
||||
)
|
||||
sys.exit(retval)
|
||||
|
||||
|
||||
|
||||
16
wrapper/ocr
16
wrapper/ocr
@ -12,17 +12,21 @@ UID = str(os.getuid())
|
||||
GID = str(os.getgid())
|
||||
|
||||
parser = ArgumentParser(add_help=False)
|
||||
parser.add_argument('-i')
|
||||
parser.add_argument('-o')
|
||||
parser.add_argument('-i', '--input-directory')
|
||||
parser.add_argument('-o', '--output-directory')
|
||||
args, remaining_args = parser.parse_known_args()
|
||||
|
||||
cmd = ['docker', 'run', '--rm', '-it', '-u', '{}:{}'.format(UID, GID)]
|
||||
if args.o is not None:
|
||||
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.o), CONTAINER_OUTPUT_DIR)]
|
||||
if args.output_directory is not None:
|
||||
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.output_directory),
|
||||
CONTAINER_OUTPUT_DIR)]
|
||||
remaining_args.insert(0, CONTAINER_OUTPUT_DIR)
|
||||
if args.i is not None:
|
||||
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.i), CONTAINER_INPUT_DIR)]
|
||||
remaining_args.insert(0, '-o')
|
||||
if args.input_directory is not None:
|
||||
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.input_directory),
|
||||
CONTAINER_INPUT_DIR)]
|
||||
remaining_args.insert(0, CONTAINER_INPUT_DIR)
|
||||
remaining_args.insert(0, '-i')
|
||||
cmd.append(CONTAINER_IMAGE)
|
||||
cmd += remaining_args
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user