mirror of
https://gitlab.ub.uni-bielefeld.de/sfb1288inf/nopaque.git
synced 2024-12-25 02:44:18 +00:00
173 lines
5.3 KiB
Python
173 lines
5.3 KiB
Python
from datetime import datetime
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from enum import IntEnum
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from flask import current_app, url_for
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from flask_hashids import HashidMixin
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from time import sleep
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from typing import Union
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from pathlib import Path
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import shutil
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from app import db
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from app.extensions.sqlalchemy_extras import ContainerColumn, IntEnumColumn
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class JobStatus(IntEnum):
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INITIALIZING = 1
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SUBMITTED = 2
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QUEUED = 3
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RUNNING = 4
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CANCELING = 5
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CANCELED = 6
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COMPLETED = 7
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FAILED = 8
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@staticmethod
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def get(job_status: Union['JobStatus', int, str]) -> 'JobStatus':
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if isinstance(job_status, JobStatus):
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return job_status
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if isinstance(job_status, int):
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return JobStatus(job_status)
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if isinstance(job_status, str):
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return JobStatus[job_status]
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raise TypeError('job_status must be JobStatus, int, or str')
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class Job(HashidMixin, db.Model):
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'''
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Class to define Jobs.
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'''
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__tablename__ = 'jobs'
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# Primary key
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id = db.Column(db.Integer, primary_key=True)
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# Foreign keys
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user_id = db.Column(db.Integer, db.ForeignKey('users.id'))
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# Fields
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creation_date = \
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db.Column(db.DateTime(), default=datetime.utcnow)
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description = db.Column(db.String(255))
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end_date = db.Column(db.DateTime())
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service = db.Column(db.String(64))
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service_args = db.Column(ContainerColumn(dict, 255))
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service_version = db.Column(db.String(16))
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status = db.Column(
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IntEnumColumn(JobStatus),
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default=JobStatus.INITIALIZING
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)
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title = db.Column(db.String(32))
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# Relationships
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inputs = db.relationship(
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'JobInput',
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back_populates='job',
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cascade='all, delete-orphan',
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lazy='dynamic'
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)
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results = db.relationship(
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'JobResult',
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back_populates='job',
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cascade='all, delete-orphan',
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lazy='dynamic'
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)
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user = db.relationship(
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'User',
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back_populates='jobs'
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)
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def __repr__(self):
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return f'<Job {self.title}>'
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@property
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def jsonpatch_path(self):
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return f'{self.user.jsonpatch_path}/jobs/{self.hashid}'
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@property
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def path(self) -> Path:
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return self.user.path / 'jobs' / f'{self.id}'
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@property
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def url(self):
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return url_for('jobs.job', job_id=self.id)
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@property
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def user_hashid(self):
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return self.user.hashid
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@staticmethod
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def create(**kwargs):
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job = Job(**kwargs)
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db.session.add(job)
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db.session.flush(objects=[job])
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db.session.refresh(job)
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job_inputs_dir = job.path / 'inputs'
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job_pipeline_data_dir = job.path / 'pipeline_data'
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job_results_dir = job.path / 'results'
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try:
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job.path.mkdir()
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job_inputs_dir.mkdir()
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job_pipeline_data_dir.mkdir()
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job_results_dir.mkdir()
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except OSError as e:
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# TODO: Potential leftover cleanup
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current_app.logger.error(e)
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db.session.rollback()
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raise
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return job
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def delete(self):
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''' Delete the job and its inputs and results from the database. '''
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if self.status not in [JobStatus.COMPLETED, JobStatus.FAILED]: # noqa
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self.status = JobStatus.CANCELING
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db.session.commit()
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while self.status != JobStatus.CANCELED:
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# In case the daemon handled a job in any way
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if self.status != JobStatus.CANCELING:
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self.status = JobStatus.CANCELING
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db.session.commit()
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sleep(1)
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db.session.refresh(self)
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try:
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shutil.rmtree(self.path)
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except OSError as e:
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current_app.logger.error(e)
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db.session.rollback()
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raise e
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db.session.delete(self)
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def restart(self):
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''' Restart a job - only if the status is failed '''
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if self.status != JobStatus.FAILED:
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raise Exception('Job status is not "failed"')
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shutil.rmtree(self.path / 'results', ignore_errors=True)
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shutil.rmtree(self.path / 'pyflow.data', ignore_errors=True)
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for result in self.results:
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db.session.delete(result)
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self.end_date = None
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self.status = JobStatus.SUBMITTED
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def to_json_serializeable(self, backrefs=False, relationships=False):
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json_serializeable = {
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'id': self.hashid,
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'creation_date': f'{self.creation_date.isoformat()}Z',
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'description': self.description,
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'end_date': (
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None if self.end_date is None
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else f'{self.end_date.isoformat()}Z'
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),
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'service': self.service,
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'service_args': self.service_args,
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'service_version': self.service_version,
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'status': self.status.name,
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'title': self.title
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}
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if backrefs:
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json_serializeable['user'] = \
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self.user.to_json_serializeable(backrefs=True)
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if relationships:
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json_serializeable['inputs'] = {
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x.hashid: x.to_json_serializeable(relationships=True)
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for x in self.inputs
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}
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json_serializeable['results'] = {
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x.hashid: x.to_json_serializeable(relationships=True)
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for x in self.results
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}
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return json_serializeable
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