Add migrations.

migrations/README

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+Generic single-database configuration.

migrations/alembic.ini

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+# A generic, single database configuration.
+
+[alembic]
+# template used to generate migration files
+# file_template = %%(rev)s_%%(slug)s
+
+# set to 'true' to run the environment during
+# the 'revision' command, regardless of autogenerate
+# revision_environment = false
+
+
+# Logging configuration
+[loggers]
+keys = root,sqlalchemy,alembic
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = WARN
+handlers = console
+qualname =
+
+[logger_sqlalchemy]
+level = WARN
+handlers =
+qualname = sqlalchemy.engine
+
+[logger_alembic]
+level = INFO
+handlers =
+qualname = alembic
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(levelname)-5.5s [%(name)s] %(message)s
+datefmt = %H:%M:%S

migrations/env.py

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+from __future__ import with_statement
+
+import logging
+from logging.config import fileConfig
+
+from sqlalchemy import engine_from_config
+from sqlalchemy import pool
+
+from alembic import context
+
+# this is the Alembic Config object, which provides
+# access to the values within the .ini file in use.
+config = context.config
+
+# Interpret the config file for Python logging.
+# This line sets up loggers basically.
+fileConfig(config.config_file_name)
+logger = logging.getLogger('alembic.env')
+
+# add your model's MetaData object here
+# for 'autogenerate' support
+# from myapp import mymodel
+# target_metadata = mymodel.Base.metadata
+from flask import current_app
+config.set_main_option(
+    'sqlalchemy.url', current_app.config.get(
+        'SQLALCHEMY_DATABASE_URI').replace('%', '%%'))
+target_metadata = current_app.extensions['migrate'].db.metadata
+
+# other values from the config, defined by the needs of env.py,
+# can be acquired:
+# my_important_option = config.get_main_option("my_important_option")
+# ... etc.
+
+
+def run_migrations_offline():
+    """Run migrations in 'offline' mode.
+
+    This configures the context with just a URL
+    and not an Engine, though an Engine is acceptable
+    here as well.  By skipping the Engine creation
+    we don't even need a DBAPI to be available.
+
+    Calls to context.execute() here emit the given string to the
+    script output.
+
+    """
+    url = config.get_main_option("sqlalchemy.url")
+    context.configure(
+        url=url, target_metadata=target_metadata, literal_binds=True
+    )
+
+    with context.begin_transaction():
+        context.run_migrations()
+
+
+def run_migrations_online():
+    """Run migrations in 'online' mode.
+
+    In this scenario we need to create an Engine
+    and associate a connection with the context.
+
+    """
+
+    # this callback is used to prevent an auto-migration from being generated
+    # when there are no changes to the schema
+    # reference: http://alembic.zzzcomputing.com/en/latest/cookbook.html
+    def process_revision_directives(context, revision, directives):
+        if getattr(config.cmd_opts, 'autogenerate', False):
+            script = directives[0]
+            if script.upgrade_ops.is_empty():
+                directives[:] = []
+                logger.info('No changes in schema detected.')
+
+    connectable = engine_from_config(
+        config.get_section(config.config_ini_section),
+        prefix='sqlalchemy.',
+        poolclass=pool.NullPool,
+    )
+
+    with connectable.connect() as connection:
+        context.configure(
+            connection=connection,
+            target_metadata=target_metadata,
+            process_revision_directives=process_revision_directives,
+            **current_app.extensions['migrate'].configure_args
+        )
+
+        with context.begin_transaction():
+            context.run_migrations()
+
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    run_migrations_online()

migrations/not_empty.txt

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-# Not empty directory

migrations/script.py.mako

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+"""${message}
+
+Revision ID: ${up_revision}
+Revises: ${down_revision | comma,n}
+Create Date: ${create_date}
+
+"""
+from alembic import op
+import sqlalchemy as sa
+${imports if imports else ""}
+
+# revision identifiers, used by Alembic.
+revision = ${repr(up_revision)}
+down_revision = ${repr(down_revision)}
+branch_labels = ${repr(branch_labels)}
+depends_on = ${repr(depends_on)}
+
+
+def upgrade():
+    ${upgrades if upgrades else "pass"}
+
+
+def downgrade():
+    ${downgrades if downgrades else "pass"}

migrations/versions/41f75a5ff745_.py

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+"""empty message
+
+Revision ID: 41f75a5ff745
+Revises: 95eecbe83668
+Create Date: 2019-10-17 10:07:51.595833
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '41f75a5ff745'
+down_revision = '95eecbe83668'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('job_results', sa.Column('job_input_id', sa.Integer(), nullable=True))
+    op.create_foreign_key(None, 'job_results', 'job_inputs', ['job_input_id'], ['id'])
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_constraint(None, 'job_results', type_='foreignkey')
+    op.drop_column('job_results', 'job_input_id')
+    # ### end Alembic commands ###

migrations/versions/95eecbe83668_.py

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+"""empty message
+
+Revision ID: 95eecbe83668
+Revises: 
+Create Date: 2019-10-17 09:20:19.740233
+
+"""
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = '95eecbe83668'
+down_revision = None
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('roles',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('default', sa.Boolean(), nullable=True),
+    sa.Column('name', sa.String(length=64), nullable=True),
+    sa.Column('permissions', sa.Integer(), nullable=True),
+    sa.PrimaryKeyConstraint('id'),
+    sa.UniqueConstraint('name')
+    )
+    op.create_index(op.f('ix_roles_default'), 'roles', ['default'], unique=False)
+    op.create_table('users',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('confirmed', sa.Boolean(), nullable=True),
+    sa.Column('email', sa.String(length=254), nullable=True),
+    sa.Column('password_hash', sa.String(length=128), nullable=True),
+    sa.Column('registration_date', sa.DateTime(), nullable=True),
+    sa.Column('role_id', sa.Integer(), nullable=True),
+    sa.Column('username', sa.String(length=64), nullable=True),
+    sa.Column('is_dark', sa.Boolean(), nullable=True),
+    sa.ForeignKeyConstraint(['role_id'], ['roles.id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.create_index(op.f('ix_users_email'), 'users', ['email'], unique=True)
+    op.create_index(op.f('ix_users_username'), 'users', ['username'], unique=True)
+    op.create_table('corpora',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('creation_date', sa.DateTime(), nullable=True),
+    sa.Column('description', sa.String(length=255), nullable=True),
+    sa.Column('title', sa.String(length=32), nullable=True),
+    sa.Column('user_id', sa.Integer(), nullable=True),
+    sa.ForeignKeyConstraint(['user_id'], ['users.id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.create_table('jobs',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('creation_date', sa.DateTime(), nullable=True),
+    sa.Column('description', sa.String(length=255), nullable=True),
+    sa.Column('end_date', sa.DateTime(), nullable=True),
+    sa.Column('mem_mb', sa.Integer(), nullable=True),
+    sa.Column('n_cores', sa.Integer(), nullable=True),
+    sa.Column('service', sa.String(length=64), nullable=True),
+    sa.Column('service_args', sa.String(length=255), nullable=True),
+    sa.Column('service_version', sa.String(length=16), nullable=True),
+    sa.Column('status', sa.String(length=16), nullable=True),
+    sa.Column('title', sa.String(length=32), nullable=True),
+    sa.Column('user_id', sa.Integer(), nullable=True),
+    sa.ForeignKeyConstraint(['user_id'], ['users.id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.create_table('corpus_files',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('filename', sa.String(length=255), nullable=True),
+    sa.Column('corpus_id', sa.Integer(), nullable=True),
+    sa.ForeignKeyConstraint(['corpus_id'], ['corpora.id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.create_table('job_inputs',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('filename', sa.String(length=255), nullable=True),
+    sa.Column('job_id', sa.Integer(), nullable=True),
+    sa.ForeignKeyConstraint(['job_id'], ['jobs.id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.create_table('job_results',
+    sa.Column('id', sa.Integer(), nullable=False),
+    sa.Column('filename', sa.String(length=255), nullable=True),
+    sa.Column('job_id', sa.Integer(), nullable=True),
+    sa.ForeignKeyConstraint(['job_id'], ['jobs.id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table('job_results')
+    op.drop_table('job_inputs')
+    op.drop_table('corpus_files')
+    op.drop_table('jobs')
+    op.drop_table('corpora')
+    op.drop_index(op.f('ix_users_username'), table_name='users')
+    op.drop_index(op.f('ix_users_email'), table_name='users')
+    op.drop_table('users')
+    op.drop_index(op.f('ix_roles_default'), table_name='roles')
+    op.drop_table('roles')
+    # ### end Alembic commands ###