mirror of
https://gitlab.ub.uni-bielefeld.de/sfb1288inf/nopaque.git
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move blueprints in dedicated folder
This commit is contained in:
Patrick Jentsch
230
app/jobs/handle_corpora.py
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230
app/jobs/handle_corpora.py
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from app import db, docker_client, scheduler
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from app.models import Corpus, CorpusStatus
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from flask import current_app
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import docker
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import os
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import shutil
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def job():
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with scheduler.app.app_context():
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_handle_corpora()
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def _handle_corpora():
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corpora = Corpus.query.all()
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for corpus in [x for x in corpora if x.status == CorpusStatus.SUBMITTED]:
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_create_build_corpus_service(corpus)
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for corpus in [x for x in corpora if x.status in [CorpusStatus.QUEUED, CorpusStatus.BUILDING]]:
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_checkout_build_corpus_service(corpus)
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for corpus in [x for x in corpora if x.status == CorpusStatus.BUILT and x.num_analysis_sessions > 0]:
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corpus.status = CorpusStatus.STARTING_ANALYSIS_SESSION
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for corpus in [x for x in corpora if x.status == CorpusStatus.RUNNING_ANALYSIS_SESSION and x.num_analysis_sessions == 0]:
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corpus.status = CorpusStatus.CANCELING_ANALYSIS_SESSION
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for corpus in [x for x in corpora if x.status == CorpusStatus.RUNNING_ANALYSIS_SESSION]:
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_checkout_analysing_corpus_container(corpus)
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for corpus in [x for x in corpora if x.status == CorpusStatus.STARTING_ANALYSIS_SESSION]:
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_create_cqpserver_container(corpus)
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for corpus in [x for x in corpora if x.status == CorpusStatus.CANCELING_ANALYSIS_SESSION]:
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_remove_cqpserver_container(corpus)
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db.session.commit()
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def _create_build_corpus_service(corpus):
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''' # Docker service settings # '''
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''' ## Command ## '''
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command = ['bash', '-c']
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command.append(
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f'mkdir /corpora/data/nopaque-{corpus.hashid.lower()}'
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' && '
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'cwb-encode'
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' -c utf8'
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f' -d /corpora/data/nopaque-{corpus.hashid.lower()}'
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' -f /root/files/corpus.vrt'
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f' -R /usr/local/share/cwb/registry/nopaque-{corpus.hashid.lower()}'
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' -P pos -P lemma -P simple_pos'
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' -S ent:0+type -S s:0'
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' -S text:0+address+author+booktitle+chapter+editor+institution+journal+pages+publisher+publishing_year+school+title'
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' -xsB -9'
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' && '
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f'cwb-make -V NOPAQUE-{corpus.hashid.upper()}'
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)
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''' ## Constraints ## '''
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constraints = ['node.role==worker']
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''' ## Image ## '''
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image = f'{current_app.config["NOPAQUE_DOCKER_IMAGE_PREFIX"]}cwb:r1879'
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''' ## Labels ## '''
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labels = {
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'origin': current_app.config['SERVER_NAME'],
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'type': 'corpus.build',
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'corpus_id': str(corpus.id)
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}
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''' ## Mounts ## '''
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mounts = []
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''' ### Data mount ### '''
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data_mount_source = os.path.join(corpus.path, 'cwb', 'data')
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data_mount_target = '/corpora/data'
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data_mount = f'{data_mount_source}:{data_mount_target}:rw'
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# Make sure that their is no data in the data directory
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shutil.rmtree(data_mount_source, ignore_errors=True)
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os.makedirs(data_mount_source)
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mounts.append(data_mount)
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''' ### File mount ### '''
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file_mount_source = os.path.join(corpus.path, 'cwb', 'corpus.vrt')
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file_mount_target = '/root/files/corpus.vrt'
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file_mount = f'{file_mount_source}:{file_mount_target}:ro'
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mounts.append(file_mount)
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''' ### Registry mount ### '''
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registry_mount_source = os.path.join(corpus.path, 'cwb', 'registry')
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registry_mount_target = '/usr/local/share/cwb/registry'
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registry_mount = f'{registry_mount_source}:{registry_mount_target}:rw'
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# Make sure that their is no data in the registry directory
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shutil.rmtree(registry_mount_source, ignore_errors=True)
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os.makedirs(registry_mount_source)
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mounts.append(registry_mount)
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''' ## Name ## '''
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name = f'build-corpus_{corpus.id}'
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''' ## Restart policy ## '''
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restart_policy = docker.types.RestartPolicy()
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try:
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docker_client.services.create(
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image,
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command=command,
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constraints=constraints,
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labels=labels,
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mounts=mounts,
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name=name,
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restart_policy=restart_policy,
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user='0:0'
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)
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Create service "{name}" failed: {e}')
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return
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corpus.status = CorpusStatus.QUEUED
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def _checkout_build_corpus_service(corpus):
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service_name = f'build-corpus_{corpus.id}'
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try:
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service = docker_client.services.get(service_name)
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except docker.errors.NotFound as e:
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current_app.logger.error(f'Get service "{service_name}" failed: {e}')
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corpus.status = CorpusStatus.FAILED
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return
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Get service "{service_name}" failed: {e}')
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service_tasks = service.tasks()
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if not service_tasks:
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return
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task_state = service_tasks[0].get('Status').get('State')
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if corpus.status == CorpusStatus.QUEUED and task_state != 'pending':
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corpus.status = CorpusStatus.BUILDING
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return
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elif corpus.status == CorpusStatus.BUILDING and task_state == 'complete':
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corpus.status = CorpusStatus.BUILT
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elif corpus.status == CorpusStatus.BUILDING and task_state == 'failed':
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corpus.status = CorpusStatus.FAILED
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else:
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return
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try:
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service.remove()
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Remove service "{service_name}" failed: {e}')
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def _create_cqpserver_container(corpus):
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''' # Docker container settings # '''
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''' ## Command ## '''
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command = []
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command.append(
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'echo "host *;" > cqpserver.init'
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' && '
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'echo "user anonymous \\"\\";" >> cqpserver.init'
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' && '
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'cqpserver -I cqpserver.init'
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)
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''' ## Detach ## '''
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detach = True
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''' ## Entrypoint ## '''
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entrypoint = ['bash', '-c']
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''' ## Image ## '''
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image = f'{current_app.config["NOPAQUE_DOCKER_IMAGE_PREFIX"]}cwb:r1879'
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''' ## Name ## '''
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name = f'cqpserver_{corpus.id}'
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''' ## Network ## '''
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network = f'{current_app.config["NOPAQUE_DOCKER_NETWORK_NAME"]}'
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''' ## Volumes ## '''
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volumes = []
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''' ### Corpus data volume ### '''
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data_volume_source = os.path.join(corpus.path, 'cwb', 'data')
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data_volume_target = '/corpora/data'
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# data_volume_source = os.path.join(corpus.path, 'cwb', 'data', f'nopaque_{corpus.id}')
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# data_volume_target = f'/corpora/data/nopaque_{corpus.hashid.lower()}'
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data_volume = f'{data_volume_source}:{data_volume_target}:rw'
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volumes.append(data_volume)
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''' ### Corpus registry volume ### '''
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registry_volume_source = os.path.join(corpus.path, 'cwb', 'registry')
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registry_volume_target = '/usr/local/share/cwb/registry'
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# registry_volume_source = os.path.join(corpus.path, 'cwb', 'registry', f'nopaque_{corpus.id}')
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# registry_volume_target = f'/usr/local/share/cwb/registry/nopaque_{corpus.hashid.lower()}'
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registry_volume = f'{registry_volume_source}:{registry_volume_target}:rw'
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volumes.append(registry_volume)
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# Check if a cqpserver container already exists. If this is the case,
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# remove it and create a new one
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try:
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container = docker_client.containers.get(name)
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except docker.errors.NotFound:
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pass
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Get container "{name}" failed: {e}')
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return
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else:
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try:
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container.remove(force=True)
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Remove container "{name}" failed: {e}')
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return
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try:
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docker_client.containers.run(
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image,
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command=command,
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detach=detach,
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entrypoint=entrypoint,
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name=name,
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network=network,
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user='0:0',
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volumes=volumes
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)
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except docker.errors.ImageNotFound as e:
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current_app.logger.error(
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f'Run container "{name}" failed '
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f'due to "docker.errors.ImageNotFound" error: {e}'
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)
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corpus.status = CorpusStatus.FAILED
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return
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Run container "{name}" failed: {e}')
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return
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corpus.status = CorpusStatus.RUNNING_ANALYSIS_SESSION
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def _checkout_analysing_corpus_container(corpus):
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container_name = f'cqpserver_{corpus.id}'
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try:
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docker_client.containers.get(container_name)
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except docker.errors.NotFound as e:
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current_app.logger.error(f'Get container "{container_name}" failed: {e}')
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corpus.num_analysis_sessions = 0
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corpus.status = CorpusStatus.BUILT
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Get container "{container_name}" failed: {e}')
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def _remove_cqpserver_container(corpus):
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container_name = f'cqpserver_{corpus.id}'
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try:
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container = docker_client.containers.get(container_name)
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except docker.errors.NotFound:
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corpus.status = CorpusStatus.BUILT
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return
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Get container "{container_name}" failed: {e}')
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return
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try:
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container.remove(force=True)
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except docker.errors.DockerException as e:
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current_app.logger.error(f'Remove container "{container_name}" failed: {e}')
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