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https://gitlab.ub.uni-bielefeld.de/sfb1288inf/nopaque.git
synced 2024-12-24 10:34:17 +00:00
Change job model.
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50273ea4d1
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@ -221,24 +221,17 @@ class Job(db.Model):
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# Primary key
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id = db.Column(db.Integer, primary_key=True)
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creation_date = db.Column(db.DateTime(), default=datetime.utcnow)
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description = db.Column(db.String(64))
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'''
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' Requested ressources.
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' Example: {"n_cores": 2,
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' "mem_mb": 4096
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' }
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'''
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ressources = db.Column(db.String(255))
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description = db.Column(db.String(255))
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mem_mb = db.Column(db.Integer)
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n_cores = db.Column(db.Integer)
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service = db.Column(db.String(64))
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'''
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' Service specific arguments in JSON format.
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' Example: {"args": ["--keep-intermediates", "skip-binarization"],
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' "lang": "eng",
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' "version": "latest"
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' }
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' Service specific arguments as string list.
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' Example: ["-l eng", "--keep-intermediates", "--skip-binarization"]
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'''
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service_args = db.Column(db.String(255))
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status = db.Column(db.String(8))
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service_version = db.Column(db.String(16))
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status = db.Column(db.String(16))
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title = db.Column(db.String(32))
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user_id = db.Column(db.Integer, db.ForeignKey('users.id'))
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@ -3,10 +3,50 @@ from wtforms import MultipleFileField, SelectField, StringField, SubmitField, Va
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from wtforms.validators import DataRequired, Length
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class NewNLPJobForm(FlaskForm):
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description = StringField(
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'Description',
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validators=[DataRequired(), Length(1, 255)]
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)
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files = MultipleFileField('Files', validators=[DataRequired()])
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language = SelectField(
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'Language',
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choices=[('', 'Choose your option'),
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('en', 'English'),
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('fr', 'French'),
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('de', 'German'),
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('it', 'Italian'),
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('pt', 'Portuguese'),
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('es', 'Spanish')
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],
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validators=[DataRequired()]
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)
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submit = SubmitField('Submit')
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title = StringField(
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'Title',
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validators=[DataRequired(), Length(1, 32)]
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)
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version = SelectField(
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'Version',
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choices=[('', 'Choose your option'),
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('latest', 'Latest'),
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],
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validators=[DataRequired()]
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)
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def validate_files(form, field):
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for file in field.data:
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if not file.filename.lower().endswith('.txt'):
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raise ValidationError(
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'File does not have an approved extension: '
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'.txt'
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)
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class NewOCRJobForm(FlaskForm):
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description = StringField(
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'Description',
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validators=[DataRequired(), Length(1, 64)]
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validators=[DataRequired(), Length(1, 255)]
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)
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files = MultipleFileField('Files', validators=[DataRequired()])
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language = SelectField(
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@ -44,43 +84,3 @@ class NewOCRJobForm(FlaskForm):
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'File does not have an approved extension: '
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'.pdf | .tif | .tiff'
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)
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class NewNLPJobForm(FlaskForm):
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description = StringField(
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'Description',
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validators=[DataRequired(), Length(1, 64)]
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)
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files = MultipleFileField('Files', validators=[DataRequired()])
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language = SelectField(
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'Language',
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choices=[('', 'Choose your option'),
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('en', 'English'),
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('fr', 'French'),
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('de', 'German'),
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('it', 'Italian'),
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('pt', 'Portuguese'),
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('es', 'Spanish')
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],
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validators=[DataRequired()]
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)
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submit = SubmitField('Submit')
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title = StringField(
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'Title',
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validators=[DataRequired(), Length(1, 32)]
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)
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version = SelectField(
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'Version',
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choices=[('', 'Choose your option'),
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('latest', 'Latest'),
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],
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validators=[DataRequired()]
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)
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def validate_files(form, field):
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for file in field.data:
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if not file.filename.lower().endswith('.txt'):
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raise ValidationError(
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'File does not have an approved extension: '
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'.txt'
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)
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@ -6,61 +6,8 @@ from ..models import Job
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from ..import swarm
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from .. import db
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from threading import Thread
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import os
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import json
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@services.route('/ocr', methods=['GET', 'POST'])
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@login_required
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def ocr():
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new_ocr_job_form = NewOCRJobForm()
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if new_ocr_job_form.validate_on_submit():
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ocr_job = Job(creator=current_user._get_current_object(),
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description=new_ocr_job_form.description.data,
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service="ocr",
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ressources=json.dumps({"n_cores": 4,
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"mem_mb": 8192}),
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service_args=json.dumps({"args": ["--keep-intermediates",
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"--skip-binarisation"],
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"lang": new_ocr_job_form.language.data,
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"version": new_ocr_job_form.version.data}),
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status="pending",
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title=new_ocr_job_form.title.data)
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db.session.add(ocr_job)
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db.session.commit()
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dir = os.path.join(current_app.config['OPAQUE_STORAGE'],
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str(ocr_job.user_id),
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'jobs',
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str(ocr_job.id))
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try:
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os.makedirs(dir)
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except OSError:
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flash('OSError!')
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db.session.remove(ocr_job)
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db.session.commit()
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else:
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for file in new_ocr_job_form.files.data:
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file.save(os.path.join(dir, file.filename))
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'''
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' TODO: Let the scheduler run this job in the background.
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'
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' NOTE: Using self created threads is just for testing purpose as
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' there is no scheduler available.
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'''
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db.session.expunge(ocr_job)
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thread = Thread(target=swarm.run, args=(ocr_job,))
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thread.start()
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flash('Job created!')
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return redirect(url_for('services.ocr'))
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return render_template(
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'services/ocr.html.j2',
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title='Optical Character Recognition',
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new_ocr_job_form=new_ocr_job_form
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)
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import os
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@services.route('/nlp', methods=['GET', 'POST'])
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@ -68,15 +15,14 @@ def ocr():
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def nlp():
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new_nlp_job_form = NewNLPJobForm()
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if new_nlp_job_form.validate_on_submit():
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nlp_job = Job(creator=current_user._get_current_object(),
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nlp_job = Job(creator=current_user,
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description=new_nlp_job_form.description.data,
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service="nlp",
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ressources=json.dumps({"n_cores": 2,
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"mem_mb": 4096}),
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service_args=json.dumps({"args": [],
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"lang": new_nlp_job_form.language.data,
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"version": new_nlp_job_form.version.data}),
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status="pending",
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mem_mb=4096,
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n_cores=2,
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service='nlp',
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service_args=json.dumps(['-l {}'.format(new_nlp_job_form.language.data)]),
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service_version=new_nlp_job_form.version.data,
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status='submitted',
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title=new_nlp_job_form.title.data)
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db.session.add(nlp_job)
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@ -113,3 +59,57 @@ def nlp():
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title='Natrual Language Processing',
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new_nlp_job_form=new_nlp_job_form
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)
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@services.route('/ocr', methods=['GET', 'POST'])
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@login_required
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def ocr():
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new_ocr_job_form = NewOCRJobForm()
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if new_ocr_job_form.validate_on_submit():
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ocr_job = Job(creator=current_user,
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description=new_ocr_job_form.description.data,
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mem_mb=8192,
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n_cores=4,
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service='ocr',
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service_args=json.dumps([
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'-l {}'.format(new_ocr_job_form.language.data),
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'--keep-intermediates',
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'--skip-binarisation']),
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service_version=new_ocr_job_form.version.data,
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status='submitted',
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title=new_ocr_job_form.title.data)
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db.session.add(ocr_job)
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db.session.commit()
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dir = os.path.join(current_app.config['OPAQUE_STORAGE'],
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str(ocr_job.user_id),
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'jobs',
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str(ocr_job.id))
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try:
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os.makedirs(dir)
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except OSError:
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flash('OSError!')
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db.session.remove(ocr_job)
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db.session.commit()
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else:
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for file in new_ocr_job_form.files.data:
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file.save(os.path.join(dir, file.filename))
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'''
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' TODO: Let the scheduler run this job in the background.
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'
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' NOTE: Using self created threads is just for testing purpose as
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' there is no scheduler available.
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'''
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db.session.expunge(ocr_job)
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thread = Thread(target=swarm.run, args=(ocr_job,))
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thread.start()
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flash('Job created!')
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return redirect(url_for('services.ocr'))
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return render_template(
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'services/ocr.html.j2',
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title='Optical Character Recognition',
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new_ocr_job_form=new_ocr_job_form
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)
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10
app/swarm.py
10
app/swarm.py
@ -35,16 +35,14 @@ class Swarm:
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'''
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# Prepare argument values needed for the service creation.
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service_args = json.loads(job.service_args)
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ressources = json.loads(job.ressources)
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_command = (job.service
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+ ' -i /files'
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+ ' -l {}'.format(service_args['lang'])
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+ ' -o /files/output'
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+ ' ' + ' '.join(service_args['args']))
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+ ' ' + ' '.join(service_args))
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_constraints = ['node.role==worker']
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_image = 'gitlab.ub.uni-bielefeld.de:4567/sfb1288inf/{}:{}'.format(
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job.service,
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service_args['version']
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job.service_version
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)
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_labels = {'service': job.service}
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_mounts = [os.path.join('/home/compute/mnt/opaque',
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@ -64,8 +62,8 @@ class Swarm:
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' in megabytes, it is also necessary to convert the value.
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'''
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_resources = docker.types.Resources(
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cpu_reservation=ressources['n_cores'] * (10 ** 9),
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mem_reservation=ressources['mem_mb'] * (10 ** 6)
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cpu_reservation=job.n_cores * (10 ** 9),
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mem_reservation=job.mem_mb * (10 ** 6)
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)
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_restart_policy = docker.types.RestartPolicy(condition='none')
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'''
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