mirror of
https://gitlab.ub.uni-bielefeld.de/sfb1288inf/nopaque.git
synced 2024-11-15 01:05:42 +00:00
Change job model.
This commit is contained in:
parent
50273ea4d1
commit
a82b7292ed
@ -221,24 +221,17 @@ class Job(db.Model):
|
|||||||
# Primary key
|
# Primary key
|
||||||
id = db.Column(db.Integer, primary_key=True)
|
id = db.Column(db.Integer, primary_key=True)
|
||||||
creation_date = db.Column(db.DateTime(), default=datetime.utcnow)
|
creation_date = db.Column(db.DateTime(), default=datetime.utcnow)
|
||||||
description = db.Column(db.String(64))
|
description = db.Column(db.String(255))
|
||||||
'''
|
mem_mb = db.Column(db.Integer)
|
||||||
' Requested ressources.
|
n_cores = db.Column(db.Integer)
|
||||||
' Example: {"n_cores": 2,
|
|
||||||
' "mem_mb": 4096
|
|
||||||
' }
|
|
||||||
'''
|
|
||||||
ressources = db.Column(db.String(255))
|
|
||||||
service = db.Column(db.String(64))
|
service = db.Column(db.String(64))
|
||||||
'''
|
'''
|
||||||
' Service specific arguments in JSON format.
|
' Service specific arguments as string list.
|
||||||
' Example: {"args": ["--keep-intermediates", "skip-binarization"],
|
' Example: ["-l eng", "--keep-intermediates", "--skip-binarization"]
|
||||||
' "lang": "eng",
|
|
||||||
' "version": "latest"
|
|
||||||
' }
|
|
||||||
'''
|
'''
|
||||||
service_args = db.Column(db.String(255))
|
service_args = db.Column(db.String(255))
|
||||||
status = db.Column(db.String(8))
|
service_version = db.Column(db.String(16))
|
||||||
|
status = db.Column(db.String(16))
|
||||||
title = db.Column(db.String(32))
|
title = db.Column(db.String(32))
|
||||||
user_id = db.Column(db.Integer, db.ForeignKey('users.id'))
|
user_id = db.Column(db.Integer, db.ForeignKey('users.id'))
|
||||||
|
|
||||||
|
@ -3,10 +3,50 @@ from wtforms import MultipleFileField, SelectField, StringField, SubmitField, Va
|
|||||||
from wtforms.validators import DataRequired, Length
|
from wtforms.validators import DataRequired, Length
|
||||||
|
|
||||||
|
|
||||||
|
class NewNLPJobForm(FlaskForm):
|
||||||
|
description = StringField(
|
||||||
|
'Description',
|
||||||
|
validators=[DataRequired(), Length(1, 255)]
|
||||||
|
)
|
||||||
|
files = MultipleFileField('Files', validators=[DataRequired()])
|
||||||
|
language = SelectField(
|
||||||
|
'Language',
|
||||||
|
choices=[('', 'Choose your option'),
|
||||||
|
('en', 'English'),
|
||||||
|
('fr', 'French'),
|
||||||
|
('de', 'German'),
|
||||||
|
('it', 'Italian'),
|
||||||
|
('pt', 'Portuguese'),
|
||||||
|
('es', 'Spanish')
|
||||||
|
],
|
||||||
|
validators=[DataRequired()]
|
||||||
|
)
|
||||||
|
submit = SubmitField('Submit')
|
||||||
|
title = StringField(
|
||||||
|
'Title',
|
||||||
|
validators=[DataRequired(), Length(1, 32)]
|
||||||
|
)
|
||||||
|
version = SelectField(
|
||||||
|
'Version',
|
||||||
|
choices=[('', 'Choose your option'),
|
||||||
|
('latest', 'Latest'),
|
||||||
|
],
|
||||||
|
validators=[DataRequired()]
|
||||||
|
)
|
||||||
|
|
||||||
|
def validate_files(form, field):
|
||||||
|
for file in field.data:
|
||||||
|
if not file.filename.lower().endswith('.txt'):
|
||||||
|
raise ValidationError(
|
||||||
|
'File does not have an approved extension: '
|
||||||
|
'.txt'
|
||||||
|
)
|
||||||
|
|
||||||
|
|
||||||
class NewOCRJobForm(FlaskForm):
|
class NewOCRJobForm(FlaskForm):
|
||||||
description = StringField(
|
description = StringField(
|
||||||
'Description',
|
'Description',
|
||||||
validators=[DataRequired(), Length(1, 64)]
|
validators=[DataRequired(), Length(1, 255)]
|
||||||
)
|
)
|
||||||
files = MultipleFileField('Files', validators=[DataRequired()])
|
files = MultipleFileField('Files', validators=[DataRequired()])
|
||||||
language = SelectField(
|
language = SelectField(
|
||||||
@ -44,43 +84,3 @@ class NewOCRJobForm(FlaskForm):
|
|||||||
'File does not have an approved extension: '
|
'File does not have an approved extension: '
|
||||||
'.pdf | .tif | .tiff'
|
'.pdf | .tif | .tiff'
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
class NewNLPJobForm(FlaskForm):
|
|
||||||
description = StringField(
|
|
||||||
'Description',
|
|
||||||
validators=[DataRequired(), Length(1, 64)]
|
|
||||||
)
|
|
||||||
files = MultipleFileField('Files', validators=[DataRequired()])
|
|
||||||
language = SelectField(
|
|
||||||
'Language',
|
|
||||||
choices=[('', 'Choose your option'),
|
|
||||||
('en', 'English'),
|
|
||||||
('fr', 'French'),
|
|
||||||
('de', 'German'),
|
|
||||||
('it', 'Italian'),
|
|
||||||
('pt', 'Portuguese'),
|
|
||||||
('es', 'Spanish')
|
|
||||||
],
|
|
||||||
validators=[DataRequired()]
|
|
||||||
)
|
|
||||||
submit = SubmitField('Submit')
|
|
||||||
title = StringField(
|
|
||||||
'Title',
|
|
||||||
validators=[DataRequired(), Length(1, 32)]
|
|
||||||
)
|
|
||||||
version = SelectField(
|
|
||||||
'Version',
|
|
||||||
choices=[('', 'Choose your option'),
|
|
||||||
('latest', 'Latest'),
|
|
||||||
],
|
|
||||||
validators=[DataRequired()]
|
|
||||||
)
|
|
||||||
|
|
||||||
def validate_files(form, field):
|
|
||||||
for file in field.data:
|
|
||||||
if not file.filename.lower().endswith('.txt'):
|
|
||||||
raise ValidationError(
|
|
||||||
'File does not have an approved extension: '
|
|
||||||
'.txt'
|
|
||||||
)
|
|
||||||
|
@ -6,61 +6,8 @@ from ..models import Job
|
|||||||
from ..import swarm
|
from ..import swarm
|
||||||
from .. import db
|
from .. import db
|
||||||
from threading import Thread
|
from threading import Thread
|
||||||
import os
|
|
||||||
import json
|
import json
|
||||||
|
import os
|
||||||
|
|
||||||
@services.route('/ocr', methods=['GET', 'POST'])
|
|
||||||
@login_required
|
|
||||||
def ocr():
|
|
||||||
new_ocr_job_form = NewOCRJobForm()
|
|
||||||
if new_ocr_job_form.validate_on_submit():
|
|
||||||
ocr_job = Job(creator=current_user._get_current_object(),
|
|
||||||
description=new_ocr_job_form.description.data,
|
|
||||||
service="ocr",
|
|
||||||
ressources=json.dumps({"n_cores": 4,
|
|
||||||
"mem_mb": 8192}),
|
|
||||||
service_args=json.dumps({"args": ["--keep-intermediates",
|
|
||||||
"--skip-binarisation"],
|
|
||||||
"lang": new_ocr_job_form.language.data,
|
|
||||||
"version": new_ocr_job_form.version.data}),
|
|
||||||
status="pending",
|
|
||||||
title=new_ocr_job_form.title.data)
|
|
||||||
|
|
||||||
db.session.add(ocr_job)
|
|
||||||
db.session.commit()
|
|
||||||
|
|
||||||
dir = os.path.join(current_app.config['OPAQUE_STORAGE'],
|
|
||||||
str(ocr_job.user_id),
|
|
||||||
'jobs',
|
|
||||||
str(ocr_job.id))
|
|
||||||
|
|
||||||
try:
|
|
||||||
os.makedirs(dir)
|
|
||||||
except OSError:
|
|
||||||
flash('OSError!')
|
|
||||||
db.session.remove(ocr_job)
|
|
||||||
db.session.commit()
|
|
||||||
else:
|
|
||||||
for file in new_ocr_job_form.files.data:
|
|
||||||
file.save(os.path.join(dir, file.filename))
|
|
||||||
'''
|
|
||||||
' TODO: Let the scheduler run this job in the background.
|
|
||||||
'
|
|
||||||
' NOTE: Using self created threads is just for testing purpose as
|
|
||||||
' there is no scheduler available.
|
|
||||||
'''
|
|
||||||
db.session.expunge(ocr_job)
|
|
||||||
thread = Thread(target=swarm.run, args=(ocr_job,))
|
|
||||||
thread.start()
|
|
||||||
flash('Job created!')
|
|
||||||
return redirect(url_for('services.ocr'))
|
|
||||||
|
|
||||||
return render_template(
|
|
||||||
'services/ocr.html.j2',
|
|
||||||
title='Optical Character Recognition',
|
|
||||||
new_ocr_job_form=new_ocr_job_form
|
|
||||||
)
|
|
||||||
|
|
||||||
|
|
||||||
@services.route('/nlp', methods=['GET', 'POST'])
|
@services.route('/nlp', methods=['GET', 'POST'])
|
||||||
@ -68,15 +15,14 @@ def ocr():
|
|||||||
def nlp():
|
def nlp():
|
||||||
new_nlp_job_form = NewNLPJobForm()
|
new_nlp_job_form = NewNLPJobForm()
|
||||||
if new_nlp_job_form.validate_on_submit():
|
if new_nlp_job_form.validate_on_submit():
|
||||||
nlp_job = Job(creator=current_user._get_current_object(),
|
nlp_job = Job(creator=current_user,
|
||||||
description=new_nlp_job_form.description.data,
|
description=new_nlp_job_form.description.data,
|
||||||
service="nlp",
|
mem_mb=4096,
|
||||||
ressources=json.dumps({"n_cores": 2,
|
n_cores=2,
|
||||||
"mem_mb": 4096}),
|
service='nlp',
|
||||||
service_args=json.dumps({"args": [],
|
service_args=json.dumps(['-l {}'.format(new_nlp_job_form.language.data)]),
|
||||||
"lang": new_nlp_job_form.language.data,
|
service_version=new_nlp_job_form.version.data,
|
||||||
"version": new_nlp_job_form.version.data}),
|
status='submitted',
|
||||||
status="pending",
|
|
||||||
title=new_nlp_job_form.title.data)
|
title=new_nlp_job_form.title.data)
|
||||||
|
|
||||||
db.session.add(nlp_job)
|
db.session.add(nlp_job)
|
||||||
@ -113,3 +59,57 @@ def nlp():
|
|||||||
title='Natrual Language Processing',
|
title='Natrual Language Processing',
|
||||||
new_nlp_job_form=new_nlp_job_form
|
new_nlp_job_form=new_nlp_job_form
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
|
@services.route('/ocr', methods=['GET', 'POST'])
|
||||||
|
@login_required
|
||||||
|
def ocr():
|
||||||
|
new_ocr_job_form = NewOCRJobForm()
|
||||||
|
if new_ocr_job_form.validate_on_submit():
|
||||||
|
ocr_job = Job(creator=current_user,
|
||||||
|
description=new_ocr_job_form.description.data,
|
||||||
|
mem_mb=8192,
|
||||||
|
n_cores=4,
|
||||||
|
service='ocr',
|
||||||
|
service_args=json.dumps([
|
||||||
|
'-l {}'.format(new_ocr_job_form.language.data),
|
||||||
|
'--keep-intermediates',
|
||||||
|
'--skip-binarisation']),
|
||||||
|
service_version=new_ocr_job_form.version.data,
|
||||||
|
status='submitted',
|
||||||
|
title=new_ocr_job_form.title.data)
|
||||||
|
|
||||||
|
db.session.add(ocr_job)
|
||||||
|
db.session.commit()
|
||||||
|
|
||||||
|
dir = os.path.join(current_app.config['OPAQUE_STORAGE'],
|
||||||
|
str(ocr_job.user_id),
|
||||||
|
'jobs',
|
||||||
|
str(ocr_job.id))
|
||||||
|
|
||||||
|
try:
|
||||||
|
os.makedirs(dir)
|
||||||
|
except OSError:
|
||||||
|
flash('OSError!')
|
||||||
|
db.session.remove(ocr_job)
|
||||||
|
db.session.commit()
|
||||||
|
else:
|
||||||
|
for file in new_ocr_job_form.files.data:
|
||||||
|
file.save(os.path.join(dir, file.filename))
|
||||||
|
'''
|
||||||
|
' TODO: Let the scheduler run this job in the background.
|
||||||
|
'
|
||||||
|
' NOTE: Using self created threads is just for testing purpose as
|
||||||
|
' there is no scheduler available.
|
||||||
|
'''
|
||||||
|
db.session.expunge(ocr_job)
|
||||||
|
thread = Thread(target=swarm.run, args=(ocr_job,))
|
||||||
|
thread.start()
|
||||||
|
flash('Job created!')
|
||||||
|
return redirect(url_for('services.ocr'))
|
||||||
|
|
||||||
|
return render_template(
|
||||||
|
'services/ocr.html.j2',
|
||||||
|
title='Optical Character Recognition',
|
||||||
|
new_ocr_job_form=new_ocr_job_form
|
||||||
|
)
|
||||||
|
10
app/swarm.py
10
app/swarm.py
@ -35,16 +35,14 @@ class Swarm:
|
|||||||
'''
|
'''
|
||||||
# Prepare argument values needed for the service creation.
|
# Prepare argument values needed for the service creation.
|
||||||
service_args = json.loads(job.service_args)
|
service_args = json.loads(job.service_args)
|
||||||
ressources = json.loads(job.ressources)
|
|
||||||
_command = (job.service
|
_command = (job.service
|
||||||
+ ' -i /files'
|
+ ' -i /files'
|
||||||
+ ' -l {}'.format(service_args['lang'])
|
|
||||||
+ ' -o /files/output'
|
+ ' -o /files/output'
|
||||||
+ ' ' + ' '.join(service_args['args']))
|
+ ' ' + ' '.join(service_args))
|
||||||
_constraints = ['node.role==worker']
|
_constraints = ['node.role==worker']
|
||||||
_image = 'gitlab.ub.uni-bielefeld.de:4567/sfb1288inf/{}:{}'.format(
|
_image = 'gitlab.ub.uni-bielefeld.de:4567/sfb1288inf/{}:{}'.format(
|
||||||
job.service,
|
job.service,
|
||||||
service_args['version']
|
job.service_version
|
||||||
)
|
)
|
||||||
_labels = {'service': job.service}
|
_labels = {'service': job.service}
|
||||||
_mounts = [os.path.join('/home/compute/mnt/opaque',
|
_mounts = [os.path.join('/home/compute/mnt/opaque',
|
||||||
@ -64,8 +62,8 @@ class Swarm:
|
|||||||
' in megabytes, it is also necessary to convert the value.
|
' in megabytes, it is also necessary to convert the value.
|
||||||
'''
|
'''
|
||||||
_resources = docker.types.Resources(
|
_resources = docker.types.Resources(
|
||||||
cpu_reservation=ressources['n_cores'] * (10 ** 9),
|
cpu_reservation=job.n_cores * (10 ** 9),
|
||||||
mem_reservation=ressources['mem_mb'] * (10 ** 6)
|
mem_reservation=job.mem_mb * (10 ** 6)
|
||||||
)
|
)
|
||||||
_restart_policy = docker.types.RestartPolicy(condition='none')
|
_restart_policy = docker.types.RestartPolicy(condition='none')
|
||||||
'''
|
'''
|
||||||
|
Loading…
Reference in New Issue
Block a user