mirror of
https://gitlab.ub.uni-bielefeld.de/sfb1288inf/file-setup.git
synced 2024-09-21 09:52:52 +00:00
47 lines
1.1 KiB
Docker
47 lines
1.1 KiB
Docker
FROM debian:buster-slim
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LABEL authors="Patrick Jentsch <p.jentsch@uni-bielefeld.de>, Stephan Porada <porada@posteo.de>"
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ENV LANG=C.UTF-8
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RUN apt-get update \
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&& apt-get install --no-install-recommends --yes \
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wget
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# Install the NLP pipeline and it's dependencies #
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## Install pyFlow ##
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ENV PYFLOW_VERSION=1.1.20
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RUN wget --no-check-certificate --quiet \
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"https://github.com/Illumina/pyflow/releases/download/v${PYFLOW_VERSION}/pyflow-${PYFLOW_VERSION}.tar.gz" \
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&& tar -xzf "pyflow-${PYFLOW_VERSION}.tar.gz" \
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&& cd "pyflow-${PYFLOW_VERSION}" \
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&& apt-get install --no-install-recommends --yes \
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python2.7 \
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&& python2.7 setup.py build install \
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&& cd .. \
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&& rm -r "pyflow-${PYFLOW_VERSION}" "pyflow-${PYFLOW_VERSION}.tar.gz"
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## Further dependencies ##
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RUN apt-get install --no-install-recommends --yes \
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imagemagick \
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procps \
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python3.7 \
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zip \
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&& mv /etc/ImageMagick-6/policy.xml /etc/ImageMagick-6/policy.xml.bak
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## Install Pipeline ##
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COPY file-setup /usr/local/bin
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RUN rm -r /var/lib/apt/lists/*
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ENTRYPOINT ["file-setup"]
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CMD ["--help"]
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