sporada/file-setup
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fix pipeline

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This commit is contained in:
Patrick Jentsch
2020-06-23 15:19:49 +02:00
parent 298a7291ea
commit 09b40c47c5
2 changed files with 28 additions and 19 deletions
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17
wrapper/file-setup
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@ -12,18 +12,21 @@ UID = str(os.getuid())
GID = str(os.getgid())
parser = ArgumentParser(add_help=False)
parser.add_argument('-i')
parser.add_argument('-o')
parser.add_argument('-f')
parser.add_argument('-i', '--input-directory')
parser.add_argument('-o', '--output-directory')
args, remaining_args = parser.parse_known_args()
cmd = ['docker', 'run', '--rm', '-it', '-u', '{}:{}'.format(UID, GID)]
if args.o is not None:
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.o), CONTAINER_OUTPUT_DIR)]
if args.output_directory is not None:
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.output_directory),
CONTAINER_OUTPUT_DIR)]
remaining_args.insert(0, CONTAINER_OUTPUT_DIR)
if args.i is not None:
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.i), CONTAINER_INPUT_DIR)]
remaining_args.insert(0, '-o')
if args.input_directory is not None:
cmd += ['-v', '{}:{}'.format(os.path.abspath(args.input_directory),
CONTAINER_INPUT_DIR)]
remaining_args.insert(0, CONTAINER_INPUT_DIR)
remaining_args.insert(0, '-i')
cmd.append(CONTAINER_IMAGE)
cmd += remaining_args
subprocess.run(cmd)